Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323G05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   0.82 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   3.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   7.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 193 DGSRETAQGDEDESKSHHCSANVWT 267
           D     ++G   +S SHH  +  WT
Sbjct: 388 DSGENNSRGHSGQSSSHHHGSKSWT 412


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 169 HSHTHGGFDGSRETAQGDEDESKSHHCSANVWTLG 273
           H      F G+ E    +   +K H  SA+ W+LG
Sbjct: 518 HGRKTWTFCGTPEYVAPEVILNKGHDISADYWSLG 552


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/49 (20%), Positives = 22/49 (44%)
 Frame = +1

Query: 106 NFVSATRSNDHGTHWFRENDMHSHTHGGFDGSRETAQGDEDESKSHHCS 252
           N  +  + ND+  +  R+ND   + +   D        + ++++ HH S
Sbjct: 493 NRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQVHHSS 541


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 170 IHTLMAALTEVGRPHREMRMNPKAITAPQMFGR 268
           I  LMA + +  R   E   + + +TA ++FGR
Sbjct: 730 IGKLMAFIWDSSRLEFEAAQDCELVTAGELFGR 762


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 59  DLYDLSLVRWRVAF 18
           D+Y L +V W++ F
Sbjct: 236 DIYSLGIVAWQMLF 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,409
Number of Sequences: 438
Number of extensions: 3578
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)