Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323G04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    27   1.7  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    25   9.0  

>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 105 LTGLFKNLSNSLVTKRFMNTGVIVLWYCEGLRM 203
           L   F+N+S+SL T  F+ + V   W C  L +
Sbjct: 453 LVDSFENISHSLCTTEFILSRVSYEWLCNALEV 485


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -3

Query: 339 NLFPIEHKWDNCRLI*IYASISFIVPYIIIGFKNKIKYRNKPIR 208
           NL+P +    +   I + A++  ++P+ ++G +  I    +PIR
Sbjct: 205 NLYPYDSDDADEEEINLNAAVRNLIPFAVVGSEKAIIVDGRPIR 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,829
Number of Sequences: 5004
Number of extensions: 42951
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)