Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323G04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine re...    33   0.16 
AF024503-2|AAG24099.1|  331|Caenorhabditis elegans Serpentine re...    29   2.0  

>AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein6 protein.
          Length = 331

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 78  YINSSNIKFLTGLFKNLSNSLVTKRFMNTGVIVLWYC 188
           ++NS NI  LTG ++N SN +V K +     + L+ C
Sbjct: 171 HVNSDNISLLTGQYRNASNFVVYKSWFGILSLTLFSC 207


>AF024503-2|AAG24099.1|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein5 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 78  YINSSNIKFLTGLFKNLSNSLVTKRFMNTGVIVLW--YC 188
           ++NS NI  LTG ++N S+ +V K       + L+  YC
Sbjct: 171 HVNSDNISLLTGQYRNASDFVVYKSLFGIMSLTLFSSYC 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,514,482
Number of Sequences: 27780
Number of extensions: 234423
Number of successful extensions: 625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)