Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323F12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    29   0.56 
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      27   1.7  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    27   2.2  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   3.9  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   5.2  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    25   6.8  
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    25   9.0  

>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +2

Query: 134 VPQKLVFLPSTEL*SRPEFKRLFKSKIKHKKTNLSSEKKINLRTISLPPQI--FLKILFI 307
           V Q++VF+           +RL+K++   KKT++S+   + +  +SL  QI   LK   +
Sbjct: 58  VTQEMVFISERSRLLLRAKRRLYKNQSLMKKTSVSTSNTVKMVFMSLAKQIEQMLKFCMM 117

Query: 308 LY 313
           +Y
Sbjct: 118 VY 119


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 135 FPKNLFFYRQRNYDPDLNLSAYLNLK*NTKRRISQAKK 248
           F +N  F R +NYDP+    A+LN   + K+ I+ A++
Sbjct: 173 FDENGNFIR-KNYDPESQYDAWLNGSVSNKKSIAAARE 209


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 395 IRNQH*CGKR*VALSKKHKTFLS 327
           IR+ +  G + + LSKKH TFLS
Sbjct: 165 IRSAYILGAKGILLSKKHNTFLS 187


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 318 SKYNIKSIFKKICGGKLIVRKLIFFSLERFVFLCF 214
           +KY I S+   +   KL+VRKL   + E   FLC+
Sbjct: 265 NKYPIDSVVHCLLSTKLLVRKL---AAELLTFLCY 296


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 409 FASECLRHKRHLKF*IYLLSRIYSSFMNRSLSQ 507
           F  +CL+  R + F  YLL+  YS  ++ +LSQ
Sbjct: 635 FIKQCLKMNRVVDFSPYLLASGYSHRLDCTLSQ 667


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 177 DHSSVDGKKTSFW 139
           D  + DGKKTSFW
Sbjct: 518 DKETEDGKKTSFW 530


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 161 STEL*SRPEFKRLFKSKIKHKKTNLSSEKKINLRTISLPPQIFLKIL 301
           STE  +R  F  +   K+  K   L ++  I L  ISLPP +  +++
Sbjct: 42  STESKARAAFPNV---KVYTKLDELLADSNIELVVISLPPNVHYEVV 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,216
Number of Sequences: 5004
Number of extensions: 38164
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)