Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323F12f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49742-1|AAC31763.1|  348|Homo sapiens rhodopsin protein.              30   5.7  
BX537381-1|CAD97623.1|  348|Homo sapiens hypothetical protein pr...    30   5.7  
BC112106-1|AAI12107.1|  348|Homo sapiens rhodopsin protein.            30   5.7  
BC112104-1|AAI12105.1|  348|Homo sapiens rhodopsin protein.            30   5.7  
AB065668-1|BAC05894.1|  348|Homo sapiens seven transmembrane hel...    30   5.7  

>U49742-1|AAC31763.1|  348|Homo sapiens rhodopsin protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 336 FFVVVPSKYNIKSIFKKICGGKLIVRKLIFFSLERFVFLC 217
           +FV  P+  N++  F  + GG++ +  L+  ++ER+V +C
Sbjct: 102 YFVFGPTGCNLEGFFATL-GGEIALWSLVVLAIERYVVVC 140


>BX537381-1|CAD97623.1|  348|Homo sapiens hypothetical protein
           protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 336 FFVVVPSKYNIKSIFKKICGGKLIVRKLIFFSLERFVFLC 217
           +FV  P+  N++  F  + GG++ +  L+  ++ER+V +C
Sbjct: 102 YFVFGPTGCNLEGFFATL-GGEIALWSLVVLAIERYVVVC 140


>BC112106-1|AAI12107.1|  348|Homo sapiens rhodopsin protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 336 FFVVVPSKYNIKSIFKKICGGKLIVRKLIFFSLERFVFLC 217
           +FV  P+  N++  F  + GG++ +  L+  ++ER+V +C
Sbjct: 102 YFVFGPTGCNLEGFFATL-GGEIALWSLVVLAIERYVVVC 140


>BC112104-1|AAI12105.1|  348|Homo sapiens rhodopsin protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 336 FFVVVPSKYNIKSIFKKICGGKLIVRKLIFFSLERFVFLC 217
           +FV  P+  N++  F  + GG++ +  L+  ++ER+V +C
Sbjct: 102 YFVFGPTGCNLEGFFATL-GGEIALWSLVVLAIERYVVVC 140


>AB065668-1|BAC05894.1|  348|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 336 FFVVVPSKYNIKSIFKKICGGKLIVRKLIFFSLERFVFLC 217
           +FV  P+  N++  F  + GG++ +  L+  ++ER+V +C
Sbjct: 102 YFVFGPTGCNLEGFFATL-GGEIALWSLVVLAIERYVVVC 140


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,159,471
Number of Sequences: 237096
Number of extensions: 1127603
Number of successful extensions: 1276
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)