Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323F11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   0.82 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.7  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 195 LNLPAAKDDTIESCTICSVSTSFATS 272
           LN+P+ K D  + C+I S+++  +TS
Sbjct: 390 LNIPSVKIDEDQKCSIESITSVNSTS 415


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 354 ALPNIFRLLCSMNHEQCT 407
           A P+IFR+ C+  H Q T
Sbjct: 416 ANPDIFRVSCATEHSQLT 433


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 354 ALPNIFRLLCSMNHEQCT 407
           A P+IFR+ C+  H Q T
Sbjct: 122 ANPDIFRVSCATEHSQLT 139


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 135 WYPSQQYRLTSEIRLQKY 82
           W  S QY +  EIR Q Y
Sbjct: 244 WMSSSQYHMPKEIRGQLY 261


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 135 WYPSQQYRLTSEIRLQKY 82
           W  S QY +  EIR Q Y
Sbjct: 244 WMSSSQYHMPKEIRGQLY 261


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 68  QMFSWYFCKRISEVNRYCWLGYHLRD 145
           ++FS Y+ + + E++    L YH +D
Sbjct: 95  ELFSLYYPQLLREMSALFKLFYHAKD 120


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 68  QMFSWYFCKRISEVNRYCWLGYHLRD 145
           ++FS Y+ + + E++    L YH +D
Sbjct: 95  ELFSLYYPQLLREMSALFKLFYHAKD 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,359
Number of Sequences: 438
Number of extensions: 2827
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)