Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323F08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 38 7e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.079
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 27 1.3
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3... 26 3.9
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c... 25 6.8
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.8
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 25 9.0
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 38.3 bits (85), Expect = 7e-04
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 135 SYGNQGSYGNQGSYGNQGSFGNQGSFGNQGS 227
+YG+ +YGN GS N GS+G ++G+ GS
Sbjct: 57 TYGSSNNYGNYGSSNNYGSYGASNTYGSNGS 87
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 135 SYGNQGSYGNQGSYGNQGSFGNQGSFGNQGS 227
+YGN GS N GSYG ++G+ GS N G+
Sbjct: 63 NYGNYGSSNNYGSYGASNTYGSNGSSNNYGN 93
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 132 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQGS 227
GS N GSYG +YG+ GS N G++G S
Sbjct: 68 GSSNNYGSYGASNTYGSNGSSNNYGNYGATNS 99
Score = 34.3 bits (75), Expect = 0.011
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 132 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQGS 227
G+YG+ +YG+ G+ GS G+ ++GN G+
Sbjct: 65 GNYGSSNNYGSYGASNTYGSNGSSNNYGNYGA 96
Score = 34.3 bits (75), Expect = 0.011
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 132 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQG 224
GSYG +YG+ GS N G++G S G+ G
Sbjct: 74 GSYGASNTYGSNGSSNNYGNYGATNSNGDAG 104
Score = 31.1 bits (67), Expect = 0.10
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 144 NQGSYGNQGSYGNQGSFGNQGSFG 215
+ +YG+ +YGN GS N GS+G
Sbjct: 54 SNSTYGSSNNYGNYGSSNNYGSYG 77
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 162 NQGSYGNQGSFGNQGSFGNQGS 227
+ +YG+ ++GN GS N GS
Sbjct: 54 SNSTYGSSNNYGNYGSSNNYGS 75
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 31.5 bits (68), Expect = 0.079
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 150 GSYGNQGSYGNQGSFGNQGSFG 215
GS G +G +G +G FG +G FG
Sbjct: 448 GSRGGRGGFGGRGGFGGRGGFG 469
Score = 27.9 bits (59), Expect = 0.97
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 168 GSYGNQGSFGNQGSFGNQG 224
GS G +G FG +G FG +G
Sbjct: 448 GSRGGRGGFGGRGGFGGRG 466
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +3
Query: 132 GSYGNQGSY--GNQGSYGNQGSFGNQGSFG 215
G G Q +Y G +G Y N G + N FG
Sbjct: 85 GGEGRQNNYRGGREGGYSNGGGYRNNRGFG 114
>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 416 LRNIASSGRY*PAQRYGNHFVVQWNIKSIQNNRLITLC 303
L N + + P HF +WNI +++++L LC
Sbjct: 93 LSNSIGTRKLDPTGELAAHFQQKWNIPVVRHSKLKPLC 130
>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/34 (23%), Positives = 22/34 (64%)
Frame = -2
Query: 520 KNVFHLLFNRAIVFKIDVVFISQSNNQTKVYRLI 419
KN+F F+RA + ++F+S+ +++++ ++
Sbjct: 168 KNLFSKKFSRAFIKAFALIFVSELGDRSQIATIV 201
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 132 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQG 224
G +G G G+ G G FG G FG +G
Sbjct: 188 GGFGGFGG-GSGGPPPGPGGFGGFGGFGGEG 217
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -2
Query: 520 KNVFHLLFNRAIVFKIDVVFISQSNNQTKVYRLISYVILLVRDDINPPN 374
KN + LFN + F I+ + +S++ V VIL +R ++ N
Sbjct: 71 KNFYKKLFNPELDFMIEQICLSKNGRFLAVVGKSKIVILGLRSKLSEQN 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,013
Number of Sequences: 5004
Number of extensions: 29220
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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