Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323F06f
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.0  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    25   4.1  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   5.4  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   5.4  
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    24   9.5  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.5  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 126  VENLMKVHRCTYEERR--NSILKYIHYNITIVLREA 25
            V NLMK+ RC +E     +S+L++  + +T +L  A
Sbjct: 1099 VSNLMKIFRCWFENEAYLDSVLEFSSHILTALLNTA 1134


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -2

Query: 162 LEMKVEAICSHVVENLMKVHRCTYEERRNSILKYIHYNITIVLREA 25
           LEM  +  C  +  +++K H  T +E+  S +K I++  TI+  ++
Sbjct: 197 LEMAEKEYCRRI--DILKCHYETIDEKDYSFVKMINFAETIIANKS 240


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 451 KLEKRLRAXMERVKALETALKEAKDGAMRDRKRXQFEVDRIKEAVRXKN 305
           KL+ +++A +ER ++L+ AL+  K+     R+        +KEA +  N
Sbjct: 333 KLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLN 381


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 445 EKRLRAXMERVKALETALKEAKDGAMRDRKRXQFEVDRIKEAVRXKN 305
           E+RL+      KALE   ++ ++ A +  K  +  + +IKE  R  N
Sbjct: 368 EERLKRINANKKALEELNQKKRELAQQQLKEQELLMQKIKETDRSGN 414


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 400 TALKEAKDGAMRDRKRXQFEVDRIK 326
           TA  EAK  A +D +R  F VDR +
Sbjct: 189 TAAVEAKQIAQQDAQRATFYVDRAR 213


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 142 NLQSRRREFNESS*MYLRRTTKFNLEIYPL*YYY 41
           N +SRR+    SS + L    KF++ IY   ++Y
Sbjct: 55  NKKSRRKNQRNSSSIGLSNPNKFSIYIYIYFFFY 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,281,970
Number of Sequences: 5004
Number of extensions: 17308
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)