Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323F06f
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879...    29   1.7  
11_06_0386 + 23012139-23012530,23012773-23012955,23013094-230131...    27   5.3  
09_03_0086 + 12230402-12231526                                         27   7.1  

>03_05_0223 -
           22087076-22087340,22087448-22087726,22087808-22087950,
           22088029-22088133,22088272-22088465,22088561-22088753,
           22088893-22089202,22089335-22089558,22089862-22089990,
           22090019-22090078,22090426-22090617,22091463-22091522,
           22091606-22091688,22092473-22092611,22092949-22093083,
           22093187-22093462
          Length = 928

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 418 RVKALETALKEAKDGAMRDRKRXQFEVDRIKEAVRXKNLARR 293
           ++K ++  LK  K GAMR+ ++  + +  +KE  R K    R
Sbjct: 856 QMKKMKKRLKSEKKGAMRELRKDNYFLSAVKEKERIKQEQER 897


>11_06_0386 +
           23012139-23012530,23012773-23012955,23013094-23013151,
           23013828-23013872
          Length = 225

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 422 GTCQGTRDSAQGSKRRCNARSQTXPVRSGQNQGSRA 315
           G  +G   +  GS R C ARS T    SGQ +   A
Sbjct: 62  GGRRGCAKNGAGSARACGARSPTSSASSGQRRRCEA 97


>09_03_0086 + 12230402-12231526
          Length = 374

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 407 TRDSAQGSKRRCNARSQTXPVRSGQNQGSRAR*KSCSPRSTG 282
           T D A  ++RR   + Q    RSG   G R R  + SP   G
Sbjct: 52  TVDKAVAARRRRQQQQQLPAARSGGGGGGRGRGSTSSPLFRG 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,579,708
Number of Sequences: 37544
Number of extensions: 121391
Number of successful extensions: 345
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)