Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323F06f
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L19120-1|AAA28155.1|  815|Caenorhabditis elegans kinesin heavy c...    69   1e-12
L07144-3|AAK21446.1|  815|Caenorhabditis elegans Uncoordinated p...    69   1e-12
AB017163-1|BAA32594.1|  815|Caenorhabditis elegans kinesin Heavy...    69   1e-12
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    33   0.074
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    33   0.074
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    33   0.074
X78553-1|CAA55296.1|  543|Caenorhabditis elegans cytoplasmic int...    30   0.69 
U49831-2|AAK68314.1|  526|Caenorhabditis elegans Intermediate fi...    30   0.69 
U49831-1|AAA93405.1|  543|Caenorhabditis elegans Intermediate fi...    30   0.69 
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ...    29   1.6  
AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical ...    29   1.6  
AL031630-3|CAA20983.1|  140|Caenorhabditis elegans Hypothetical ...    28   2.8  
U53154-10|AAC25849.1|  142|Caenorhabditis elegans Hypothetical p...    28   3.7  

>L19120-1|AAA28155.1|  815|Caenorhabditis elegans kinesin heavy
           chain protein.
          Length = 815

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 35/65 (53%), Positives = 47/65 (72%)
 Frame = -1

Query: 454 PKLEKRLRAXMERVKALETALKEAKDGAMRDRKRXQFEVDRIKEAVRXKNLARRGPQAQI 275
           PK+E RLR   +R+K LETAL+++K  +  +RK+ Q EV+RIKEAVR +N+ RR    QI
Sbjct: 730 PKMEARLRGREDRIKILETALRDSKQRSQAERKKYQQEVERIKEAVRQRNM-RRMNAPQI 788

Query: 274 AKPIR 260
            KPIR
Sbjct: 789 VKPIR 793


>L07144-3|AAK21446.1|  815|Caenorhabditis elegans Uncoordinated
           protein 116 protein.
          Length = 815

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 35/65 (53%), Positives = 47/65 (72%)
 Frame = -1

Query: 454 PKLEKRLRAXMERVKALETALKEAKDGAMRDRKRXQFEVDRIKEAVRXKNLARRGPQAQI 275
           PK+E RLR   +R+K LETAL+++K  +  +RK+ Q EV+RIKEAVR +N+ RR    QI
Sbjct: 730 PKMEARLRGREDRIKILETALRDSKQRSQAERKKYQQEVERIKEAVRQRNM-RRMNAPQI 788

Query: 274 AKPIR 260
            KPIR
Sbjct: 789 VKPIR 793


>AB017163-1|BAA32594.1|  815|Caenorhabditis elegans kinesin Heavy
           chain protein.
          Length = 815

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 35/65 (53%), Positives = 47/65 (72%)
 Frame = -1

Query: 454 PKLEKRLRAXMERVKALETALKEAKDGAMRDRKRXQFEVDRIKEAVRXKNLARRGPQAQI 275
           PK+E RLR   +R+K LETAL+++K  +  +RK+ Q EV+RIKEAVR +N+ RR    QI
Sbjct: 730 PKMEARLRGREDRIKILETALRDSKQRSQAERKKYQQEVERIKEAVRQRNM-RRMNAPQI 788

Query: 274 AKPIR 260
            KPIR
Sbjct: 789 VKPIR 793


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 33.5 bits (73), Expect = 0.074
 Identities = 18/52 (34%), Positives = 34/52 (65%)
 Frame = -1

Query: 451 KLEKRLRAXMERVKALETALKEAKDGAMRDRKRXQFEVDRIKEAVRXKNLAR 296
           KLE++++   + VK  E ALK A+ GA  ++++ Q + DR+KE ++   ++R
Sbjct: 623 KLEQKIKDKKKEVKEAEAALKSAR-GA--EKEKAQKKYDRLKEQLKKLKISR 671


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 33.5 bits (73), Expect = 0.074
 Identities = 18/52 (34%), Positives = 34/52 (65%)
 Frame = -1

Query: 451 KLEKRLRAXMERVKALETALKEAKDGAMRDRKRXQFEVDRIKEAVRXKNLAR 296
           KLE++++   + VK  E ALK A+ GA  ++++ Q + DR+KE ++   ++R
Sbjct: 695 KLEQKIKDKKKEVKEAEAALKSAR-GA--EKEKAQKKYDRLKEQLKKLKISR 743


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 33.5 bits (73), Expect = 0.074
 Identities = 18/52 (34%), Positives = 34/52 (65%)
 Frame = -1

Query: 451 KLEKRLRAXMERVKALETALKEAKDGAMRDRKRXQFEVDRIKEAVRXKNLAR 296
           KLE++++   + VK  E ALK A+ GA  ++++ Q + DR+KE ++   ++R
Sbjct: 695 KLEQKIKDKKKEVKEAEAALKSAR-GA--EKEKAQKKYDRLKEQLKKLKISR 743


>X78553-1|CAA55296.1|  543|Caenorhabditis elegans cytoplasmic
           intermediate filamentprotein protein.
          Length = 543

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 445 EKRLRAXMERVKALETALKEAKDGAMRDRKRXQFEVDRIK 326
           EKRL A  +++     A K+  D A+ DR+R Q E D +K
Sbjct: 167 EKRLYAEQDQLYLQLAAAKDELDAAIVDRRRLQAEEDDLK 206


>U49831-2|AAK68314.1|  526|Caenorhabditis elegans Intermediate
           filament, b protein2, isoform c protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 445 EKRLRAXMERVKALETALKEAKDGAMRDRKRXQFEVDRIK 326
           EKRL A  +++     A K+  D A+ DR+R Q E D +K
Sbjct: 167 EKRLYAEQDQLYLQLAAAKDELDAAIVDRRRLQAEEDDLK 206


>U49831-1|AAA93405.1|  543|Caenorhabditis elegans Intermediate
           filament, b protein2, isoform a protein.
          Length = 543

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 445 EKRLRAXMERVKALETALKEAKDGAMRDRKRXQFEVDRIK 326
           EKRL A  +++     A K+  D A+ DR+R Q E D +K
Sbjct: 167 EKRLYAEQDQLYLQLAAAKDELDAAIVDRRRLQAEEDDLK 206


>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 320 GFLDSVHFELXSFAIAHCTVFCFLERC 400
           G LD  HF    F +AHC    +  RC
Sbjct: 782 GVLDKAHFGATQFGLAHCAFELYGHRC 808


>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 320 GFLDSVHFELXSFAIAHCTVFCFLERC 400
           G LD  HF    F +AHC    +  RC
Sbjct: 782 GVLDKAHFGATQFGLAHCAFELYGHRC 808


>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 320 GFLDSVHFELXSFAIAHCTVFCFLERC 400
           G LD  HF    F +AHC    +  RC
Sbjct: 782 GVLDKAHFGATQFGLAHCAFELYGHRC 808


>AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical
           protein Y59C2A.3 protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -1

Query: 442 KRLRAXMERVKALETALKEAKDGAMRDRKRXQFEVDRIKEAVRXKNLARRGPQAQI 275
           K  RA  +R + L   + E    A+  R+R +  VD   EAVR KN A++   A+I
Sbjct: 195 KEKRAAADRARYLR--MSEEDRSALNQRRREKHSVDVNLEAVREKN-AKKAEAARI 247


>AL031630-3|CAA20983.1|  140|Caenorhabditis elegans Hypothetical
           protein Y38H6C.3 protein.
          Length = 140

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 451 KLEKRLRAXMERVKALETALKEAKDGAMRDRKRXQFEVDRIKEAVRXKN 305
           ++EKR    MERVKA+ETA    +       K  + E  R  E ++ +N
Sbjct: 45  EIEKRRNENMERVKAIETASTSEQKNPEVVPKEPKPEKPRNPEELKKQN 93


>U53154-10|AAC25849.1|  142|Caenorhabditis elegans Hypothetical
           protein C33G8.3 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -1

Query: 451 KLEKRLRAXMERVKALETALKEAKDGAMRDRKRXQFEVDRIKEAVRXKNLARR 293
           KLEK+L   ME+V+ ++  ++E K+   +  K+   + D  +E    K+  ++
Sbjct: 49  KLEKKLDEIMEKVEKIKDKIEENKEKREKKNKKKGNKKDEDEEEEEDKDKKKK 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,252,632
Number of Sequences: 27780
Number of extensions: 103603
Number of successful extensions: 391
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)