Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323F04f
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    25   3.2  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   5.5  
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    25   5.5  
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    24   9.7  

>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -3

Query: 306 RQHSRQGQRDRGPKLPKGQMERHR-----QLKRPPVRHKRQGQQRMQ 181
           R++    +RD  P   + + ERHR     +  R PV H+R  Q  ++
Sbjct: 47  RRYEDSQRRDYSPARRRDRYERHRESVREESPRRPVEHERNWQPELK 93


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 109 HWWRHLQW 132
           +WWRHL W
Sbjct: 57  NWWRHLNW 64


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 32  QNDENYLSHLCAGRHRRGQADTFKRTIGGGTCSGNRNKLSVLPSHQQRISCI 187
           ++DE Y   L      RG+ +T K+     + +  RNK +   S +Q  +C+
Sbjct: 316 KDDEQYAKRLAKEEEERGKKETPKK----ASNTPRRNKSNTQKSRKQSENCL 363


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 320 GLVLN-GNIAGRGSEIGGRSY 261
           G +LN G+IAGR S +GG  Y
Sbjct: 138 GDILNVGSIAGRESYVGGSVY 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,229,402
Number of Sequences: 5004
Number of extensions: 20396
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)