Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323F04f
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422... 32 0.19
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 30 0.76
01_05_0421 + 21990034-21990392,21991691-21992681 30 0.76
12_01_0347 + 2658545-2659309 29 1.3
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 29 1.8
07_03_1185 + 24645963-24646316,24647990-24648226,24649027-246491... 28 2.3
12_02_0122 + 13923510-13925081 27 7.1
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191... 27 7.1
12_02_1267 - 27448871-27450445 26 9.4
08_01_1005 - 10183796-10185183,10186673-10186859 26 9.4
07_01_0294 + 2130956-2131087,2131495-2131950 26 9.4
03_01_0366 - 2848449-2849032,2849155-2849233,2849346-2849608,284... 26 9.4
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129... 26 9.4
>07_03_0203 +
15138864-15140452,15140629-15140726,15141924-15142235,
15142437-15142749,15144025-15146023,15147033-15147068
Length = 1448
Score = 31.9 bits (69), Expect = 0.19
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 131 GNRNKLSVLPSHQQRISCIRCCPCRLCRTGGRFSCLCRSICPFGSF 268
GN LS++PSH CI C R+ T R + P G F
Sbjct: 275 GNLKSLSLVPSHSASSKCISCDGLRIVSTPPRLLQKLELLMPIGVF 320
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 29.9 bits (64), Expect = 0.76
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 261 PKGQMERHRQLKRPPVR--HKRQGQQRMQLI 175
P+G HR+L PP+R H+R G+Q ++
Sbjct: 134 PRGAHFNHRRLHHPPIRLKHRRDGEQPANVV 164
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 29.9 bits (64), Expect = 0.76
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 252 QMERHRQLKRPPVRHKRQGQQRMQLIRC*C 163
Q + H+ + + P +H++Q QQR QL++ C
Sbjct: 187 QQQHHQDVMQSPHQHQQQQQQRQQLVQQNC 216
>12_01_0347 + 2658545-2659309
Length = 254
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 65 AGRHRRGQADTFKRTIGGGTCSG 133
A RHRR +T R +GGG C G
Sbjct: 142 ARRHRRWSLETRPRGVGGGCCPG 164
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 321 RSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRPPVRHKRQGQQR 187
RS +R+ SR +RD + + +R R R RH R+ + R
Sbjct: 276 RSSPRRRRSRSHERDHDSERDRSDRDRGRHKDREHDRHAREDRDR 320
>07_03_1185 +
24645963-24646316,24647990-24648226,24649027-24649170,
24649296-24649427,24649524-24649811
Length = 384
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 321 RSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRPPVRHKRQ 199
RS R +R+ Q+ +GP LP+ R R L P + H +Q
Sbjct: 75 RSASVRYAARRQQQQQGPPLPRSSSTRPRSLADPEL-HPQQ 114
>12_02_0122 + 13923510-13925081
Length = 523
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 41 ENYLSHLCAGRHRRGQAD 94
E YLSH CA R RR +AD
Sbjct: 74 EAYLSHACARRARRLKAD 91
>05_07_0146 +
28018236-28018580,28018670-28018777,28018984-28019148,
28019269-28019736,28019823-28019936,28020038-28020715
Length = 625
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 300 HSRQGQRDRGPKLPKGQMERHRQLKRPPVRHKRQGQ 193
H G R+RG + RH Q ++PP ++Q Q
Sbjct: 283 HPIHGGRERGSSPAEADHHRHHQQEQPPPPPQQQQQ 318
>12_02_1267 - 27448871-27450445
Length = 524
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +2
Query: 5 SARGHNQL*QND-----ENYLSHLCAGRHRRGQADTFK 103
S GH + ++D E YLSH CA R R+ +AD K
Sbjct: 56 SEYGHQRFRRSDFFLAVEAYLSHACARRARKLRADLGK 93
>08_01_1005 - 10183796-10185183,10186673-10186859
Length = 524
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +2
Query: 113 GGGTCSGNRNKLSVLPSHQQRISCIRCCPCRLC 211
GGG+ L+V+ ++ ++C PC +C
Sbjct: 165 GGGSSRAGAGNLTVIVDTGSDLTWVQCKPCSVC 197
>07_01_0294 + 2130956-2131087,2131495-2131950
Length = 195
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 305 GNIAGRGSEIGGRSYQRGR 249
GN+A GSE+GG + GR
Sbjct: 130 GNVAAAGSEVGGGGRRSGR 148
>03_01_0366 -
2848449-2849032,2849155-2849233,2849346-2849608,
2849742-2849862
Length = 348
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -3
Query: 282 RDRGPKLPKGQMERHRQLKRPPVRHKRQGQQRMQLIRC*CDGSTESLLR 136
+D G + Q + + K+PP K + + + IR CDG + + R
Sbjct: 100 KDDGGEKKDAQAKEEKGKKQPPEEKKPKEETVLLRIRLHCDGCADRIRR 148
>02_03_0315 -
17610605-17610855,17611304-17611370,17612876-17612941,
17613037-17613158,17613245-17613428,17614262-17614494,
17614580-17614913,17615043-17615186,17615303-17615344
Length = 480
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -1
Query: 293 GRGSEIGGRSYQRGRWSDIGS*SDRRCDISGRG 195
GRG+ GGRSY RG +S R D GRG
Sbjct: 421 GRGNYSGGRSYGRGDFS-------YRSDYGGRG 446
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,805,279
Number of Sequences: 37544
Number of extensions: 179376
Number of successful extensions: 646
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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