Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323F04f
(392 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 31 0.39
AY204183-1|AAO39187.1| 406|Caenorhabditis elegans nuclear recep... 28 2.7
AL132948-14|CAD91709.1| 399|Caenorhabditis elegans Hypothetical... 28 2.7
U80840-11|AAB37935.3| 392|Caenorhabditis elegans Hypothetical p... 27 3.6
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 27 6.3
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 27 6.3
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 27 6.3
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 27 6.3
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 27 6.3
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 27 6.3
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 27 6.3
Z71263-5|CAA95824.1| 356|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z70265-2|CAA94200.1| 388|Caenorhabditis elegans Hypothetical pr... 26 8.4
AF291847-1|AAK55964.1| 356|Caenorhabditis elegans heterotrimeri... 26 8.4
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 30.7 bits (66), Expect = 0.39
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 321 RSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRP 220
R + +Q QGQ+ GP+ P GQ + RQL P
Sbjct: 760 RMAMFQQQQAQGQQPGGPQQPMGQWPQQRQLPVP 793
>AY204183-1|AAO39187.1| 406|Caenorhabditis elegans nuclear receptor
NHR-95 protein.
Length = 406
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 282 RDRGPKLPKGQMERHRQLKRPPVRHKRQGQQRMQLIRC 169
+D G G++ + Q+ + R+G++RMQLIRC
Sbjct: 349 KDLGMLRYAGRLAKMMQVNNSIQENIRKGRERMQLIRC 386
>AL132948-14|CAD91709.1| 399|Caenorhabditis elegans Hypothetical
protein Y39B6A.17b protein.
Length = 399
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 282 RDRGPKLPKGQMERHRQLKRPPVRHKRQGQQRMQLIRC 169
+D G G++ + Q+ + R+G++RMQLIRC
Sbjct: 342 KDLGMLRYAGRLAKMMQVNNSIQENIRKGRERMQLIRC 379
>U80840-11|AAB37935.3| 392|Caenorhabditis elegans Hypothetical
protein F08D12.12 protein.
Length = 392
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 330 RILRSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRPP 217
R L+ G+K Q S ++ K P M+ R+L +PP
Sbjct: 98 RFLKRGVKSQLSNSSSAEQCGKPPDPTMKNIRELLQPP 135
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +2
Query: 68 GRHRRGQADTFKRTIGGGTCSGNRNKLSVLPSHQQRISCIRCCPCRLCRTGGRFSCLCRS 247
G++ G A + G TC + N L + P+ + C R C G R C C S
Sbjct: 722 GKYGYGCALDCPKCASGSTCD-HINGLCICPAGLEGALCTRPCSAGFWGNGCRQVCRCTS 780
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +2
Query: 68 GRHRRGQADTFKRTIGGGTCSGNRNKLSVLPSHQQRISCIRCCPCRLCRTGGRFSCLCRS 247
G++ G A + G TC + N L + P+ + C R C G R C C S
Sbjct: 722 GKYGYGCALDCPKCASGSTCD-HINGLCICPAGLEGALCTRPCSAGFWGNGCRQVCRCTS 780
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +2
Query: 68 GRHRRGQADTFKRTIGGGTCSGNRNKLSVLPSHQQRISCIRCCPCRLCRTGGRFSCLCRS 247
G++ G A + G TC + N L + P+ + C R C G R C C S
Sbjct: 722 GKYGYGCALDCPKCASGSTCD-HINGLCICPAGLEGALCTRPCSAGFWGNGCRQVCRCTS 780
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +2
Query: 68 GRHRRGQADTFKRTIGGGTCSGNRNKLSVLPSHQQRISCIRCCPCRLCRTGGRFSCLCRS 247
G++ G A + G TC + N L + P+ + C R C G R C C S
Sbjct: 722 GKYGYGCALDCPKCASGSTCD-HINGLCICPAGLEGALCTRPCSAGFWGNGCRQVCRCTS 780
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform a
protein.
Length = 4488
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -3
Query: 327 ILRSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRPPVRHKRQ 199
+ + QH RQ Q R +L + Q ++H+Q ++ P ++Q
Sbjct: 177 VTHQNLYEQHRRQQQLIREQQLYQHQHQQHQQQQQQPQEQQQQ 219
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform d
protein.
Length = 4369
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -3
Query: 327 ILRSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRPPVRHKRQ 199
+ + QH RQ Q R +L + Q ++H+Q ++ P ++Q
Sbjct: 177 VTHQNLYEQHRRQQQLIREQQLYQHQHQQHQQQQQQPQEQQQQ 219
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform c
protein.
Length = 4447
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -3
Query: 327 ILRSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRPPVRHKRQ 199
+ + QH RQ Q R +L + Q ++H+Q ++ P ++Q
Sbjct: 177 VTHQNLYEQHRRQQQLIREQQLYQHQHQQHQQQQQQPQEQQQQ 219
>Z71263-5|CAA95824.1| 356|Caenorhabditis elegans Hypothetical
protein F52A8.2 protein.
Length = 356
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 149 SVLPSHQQRISCIRCCPCRLCRTGGRFSCLCR 244
SVL H+ RISC+R P + C R
Sbjct: 322 SVLYGHENRISCLRTSPDGTAVCSASWDCTIR 353
>Z70265-2|CAA94200.1| 388|Caenorhabditis elegans Hypothetical
protein C05A9.3 protein.
Length = 388
Score = 26.2 bits (55), Expect = 8.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 65 AGRHRRGQADTFKRTIGGG--TCSGNRNKLSVLPSHQQR 175
AG HRR A + T GG TC+ N L + +H+QR
Sbjct: 153 AGAHRRSNASSTVSTHSGGRSTCA-MMNTLHMAVAHKQR 190
>AF291847-1|AAK55964.1| 356|Caenorhabditis elegans heterotrimeric G
protein beta subunit2 protein.
Length = 356
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 149 SVLPSHQQRISCIRCCPCRLCRTGGRFSCLCR 244
SVL H+ RISC+R P + C R
Sbjct: 322 SVLYGHENRISCLRTSPDGTAVCSASWDCTIR 353
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,222,141
Number of Sequences: 27780
Number of extensions: 139981
Number of successful extensions: 502
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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