Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323F03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    36   0.003
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   0.97 
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    27   1.3  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    27   1.3  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   1.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   3.9  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    26   3.9  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   5.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   5.2  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   9.0  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 27/73 (36%), Positives = 40/73 (54%)
 Frame = -1

Query: 497 NASVSTIALAATLKSSTDFVSDVSSGLGLFICSLNSTSNTFSLFSKEFSMSDSTFLYSST 318
           ++S+ST ++ +T  SS+   S +SS       S +S+S+  S+ S   S S S    SST
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSS--SIISSSSSSSSSPTSTSST 289

Query: 317 WYLKSSTFSSPTS 279
               SS+ SSPTS
Sbjct: 290 ISSSSSSSSSPTS 302



 Score = 31.5 bits (68), Expect = 0.079
 Identities = 24/70 (34%), Positives = 38/70 (54%)
 Frame = -1

Query: 497 NASVSTIALAATLKSSTDFVSDVSSGLGLFICSLNSTSNTFSLFSKEFSMSDSTFLYSST 318
           ++S S+   ++++ SS+ F S  +S       S +S+S + S FS   S S S+  +SST
Sbjct: 314 SSSFSSTLSSSSMSSSSSFSSSPTSSSSTI--SSSSSSPSSSSFSSTTSSSKSSSSFSST 371

Query: 317 WYLKSSTFSS 288
               SST SS
Sbjct: 372 VSSSSSTSSS 381



 Score = 28.7 bits (61), Expect = 0.56
 Identities = 25/73 (34%), Positives = 37/73 (50%)
 Frame = -1

Query: 497 NASVSTIALAATLKSSTDFVSDVSSGLGLFICSLNSTSNTFSLFSKEFSMSDSTFLYSST 318
           ++S+S+ + ++T  SS+   S +SS       S  STS+T S  S   S   ST    S+
Sbjct: 251 SSSLSSSSSSSTASSSSSSSSIISSSSSSS-SSPTSTSSTISSSSSSSSSPTSTSSTISS 309

Query: 317 WYLKSSTFSSPTS 279
               SS+FSS  S
Sbjct: 310 SSSSSSSFSSTLS 322



 Score = 28.3 bits (60), Expect = 0.73
 Identities = 24/72 (33%), Positives = 37/72 (51%)
 Frame = -1

Query: 494 ASVSTIALAATLKSSTDFVSDVSSGLGLFICSLNSTSNTFSLFSKEFSMSDSTFLYSSTW 315
           +S S  +  ++ KSS+ F S VSS       +L S+S++ S  +   S S S   + S+ 
Sbjct: 351 SSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSS 410

Query: 314 YLKSSTFSSPTS 279
             KSS  S+P S
Sbjct: 411 SSKSS--SAPVS 420



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = -1

Query: 473 LAATLKSSTDFVSDVSSGLGLFICSLNS--TSNTFSLFSKEFSMSDSTFLYSSTWYLKSS 300
           ++++  SS+ F S +SS       S +S  TS++ ++ S   S S S+F  S+T   KSS
Sbjct: 307 ISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFS-STTSSSKSS 365

Query: 299 TFSSPTSLERKACKISTL 246
           +  S T     +   STL
Sbjct: 366 SSFSSTVSSSSSTSSSTL 383


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = -1

Query: 497 NASVSTIALAATLKSSTDFVSDVSSGLGLFICSLNS--TSNTFSLFSKEFSMSDSTFLYS 324
           ++ +S+ ++ +T  S +  +S  +S       S++S  TS+TFS  S     S S+ + S
Sbjct: 561 SSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISS 620

Query: 323 STWYLKSSTFSSPTSLERKACKIS 252
           S+  L S T S+ + +   +  IS
Sbjct: 621 SSTILSSPTPSTSSLMISSSSIIS 644



 Score = 27.5 bits (58), Expect = 1.3
 Identities = 27/84 (32%), Positives = 39/84 (46%)
 Frame = -1

Query: 497 NASVSTIALAATLKSSTDFVSDVSSGLGLFICSLNSTSNTFSLFSKEFSMSDSTFLYSST 318
           ++S++TI+   +  S     S VSS L     S +STS   S+ S   S + S+   SS 
Sbjct: 554 SSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTS--LSISSSSTSSTFSSASTSSP 611

Query: 317 WYLKSSTFSSPTSLERKACKISTL 246
             + SS  SS T L       S+L
Sbjct: 612 SSISSSISSSSTILSSPTPSTSSL 635



 Score = 25.4 bits (53), Expect = 5.2
 Identities = 23/73 (31%), Positives = 40/73 (54%)
 Frame = -1

Query: 497 NASVSTIALAATLKSSTDFVSDVSSGLGLFICSLNSTSNTFSLFSKEFSMSDSTFLYSST 318
           ++S S  +  +TL +S++ VS+VSS L     ++ STS+  S  S     S  T + SS+
Sbjct: 485 SSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSS--STPSSSIISSPMTSVLSSS 542

Query: 317 WYLKSSTFSSPTS 279
             + +S+ S  +S
Sbjct: 543 SSIPTSSSSDFSS 555


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 61  ELQDCSDSEKDLRAITPLDKNKNNSENEIHDD 156
           +L D   S K  R+ TP +  K+NS N+ H D
Sbjct: 139 KLSDDEASNKSSRSSTPRNSIKSNSSNQGHGD 170


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 79  DSEKDLRAITPLDKNKNNSENEIHDDEIQSEAAE 180
           +  KD  A TPLD++   SE E  DD + S+  E
Sbjct: 35  EESKDWIADTPLDESAIVSEEESDDDSLLSDLPE 68


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -1

Query: 470 AATLKSSTDFVSDVSSGLGLFICSLNSTSNTFSLFSKEFSMSDSTFLYSSTW--YLKSST 297
           AAT  S + F  D      L + +  S S  F LF+K+ ++S+   +Y+ST+   L S  
Sbjct: 520 AATTTSFSQFSVDNERST-LLVGNPPSNSIYFFLFAKDETVSEQAPIYNSTYELILASLN 578

Query: 296 FSSPTSLERK 267
            S P   + K
Sbjct: 579 TSEPVPADAK 588


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 55  NDELQDCSDSEKDLRAITPLDKNKNNSENEIHDDE 159
           +D+L +   S++DL      D+N ++S+ EI+D++
Sbjct: 148 DDKLSEEDLSKEDLETTLKGDENYSSSQKEIYDND 182


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 347 SDSTFLYSSTWYLKSSTFSSPTSLERKACKIS 252
           S+STF + S  Y + STF+ P     K  K S
Sbjct: 183 SESTFCHPSNGYTEVSTFNKPAYFGSKDLKQS 214


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = -1

Query: 455  SSTDFVSDVSSGLGLFICSLNSTSNTFSLFSKEFSMSDSTFLYSSTWYLKSSTFSSPTSL 276
            + T+ +SD+ S L  F+C  N ++    ++  +FS+ D +  Y +   L+    S    +
Sbjct: 1395 AKTELLSDLYSTLLSFVCPANVSNENQEVY--KFSLEDLSSTYVAN--LEDLFPSEKNHI 1450

Query: 275  ERKACKISTL 246
                C++S L
Sbjct: 1451 SYSPCQLSLL 1460


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 34  SSELGFTNDELQDCSDSEKDLRAITPLDKNKNNSENEIHDDEIQ 165
           +SE  F N +++D    E+DLRA      N+   ++ + D + Q
Sbjct: 447 NSERDFQNKKIKDFEKIEQDLRACLNSSSNELKEKSALIDKKDQ 490


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -1

Query: 413 LFICSLNSTSNTFSLFSKEFSMSDSTFLY 327
           + +C++   S  F L+ K ++ +D+ FL+
Sbjct: 897 MVLCAIVQFSGVFFLYLKNYNFNDNQFLF 925


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 4   EQIPEIPDGKSSELGFTNDELQDCSDSEKDLRAITPLDKNKNNSENEIHDDEIQSEAAE 180
           E+IP++ +    E   T +   +  D E+DL   T     K +SE    D+ I ++ AE
Sbjct: 552 EEIPQVSEVLEPEKAHTTNLQLNALDKEEDLNITTV----KQSSEPTADDNLIPNKEAE 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.308    0.128    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,488,029
Number of Sequences: 5004
Number of extensions: 21306
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)