Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323F02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   1.7  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   5.2  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    25   6.8  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   9.0  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
 Frame = -3

Query: 423  CPAG--DINLCSVWRNVLRYSLSVSHVGWSNQRSS-----GYCWNSC 304
            C AG  D++ C+ W     Y        + NQ +S      YCWN C
Sbjct: 1237 CSAGVTDMSECNTWSYQKSYDYITGCNNYDNQGNSQTDASDYCWNVC 1283


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 25/96 (26%), Positives = 38/96 (39%)
 Frame = -3

Query: 408 INLCSVWRNVLRYSLSVSHVGWSNQRSSGYCWNSCDCTRFSSNYKGSSDEYDRFEREHLA 229
           I L ++   +  Y L++       Q S GY   S   + +SS+Y   S  Y R       
Sbjct: 591 IGLGALTEEMREYLLTMPKSEPKEQDSEGYSSGSETGSTYSSSY---SSTYSR------- 640

Query: 228 RFGRDYNLMNRTPMQSETYSLDNEMNMKTNSNQLNY 121
             GR Y+   R+  +S +YS    +    N N   Y
Sbjct: 641 --GRSYSRSTRSYSKSRSYSRSRSVTPINNINHKKY 674


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 501 SYRSSKWSCNRGYGRSEGRCCYQRTQCPAGDINLCSVWRN 382
           +YRS +W+        E  CC     C + +I +C V RN
Sbjct: 52  TYRS-RWAYVNDPQIGEINCCLNGWLCESNNILVCDVCRN 90


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 456 SCRSPCCNSICC 491
           +CR+PCC+ + C
Sbjct: 292 ACRTPCCDKLFC 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,689,161
Number of Sequences: 5004
Number of extensions: 30181
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)