Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323F02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0261 - 2739622-2739664,2739780-2739878,2739934-2740008,274... 36 0.026
07_03_0072 - 13051145-13052362 30 0.98
04_04_0072 + 22524974-22525310,22526334-22526552,22526826-225275... 30 0.98
05_04_0410 + 21053952-21054014,21054127-21054160,21054267-21054448 29 3.0
01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398... 29 3.0
11_06_0507 + 24402239-24402297,24402686-24402753,24403704-244037... 28 5.2
09_04_0393 + 17255315-17256019,17256107-17257909 27 6.9
08_02_0773 + 21043553-21043813,21044775-21045203 27 6.9
01_06_0639 + 30772804-30772904,30773386-30775675 27 6.9
>10_01_0261 -
2739622-2739664,2739780-2739878,2739934-2740008,
2740095-2740166,2741490-2741651,2742795-2742869,
2742992-2743063,2743295-2743318,2743396-2743481
Length = 235
Score = 35.5 bits (78), Expect = 0.026
Identities = 25/91 (27%), Positives = 35/91 (38%)
Frame = -3
Query: 396 SVWRNVLRYSLSVSHVGWSNQRSSGYCWNSCDCTRFSSNYKGSSDEYDRFEREHLARFGR 217
S W + S+ V S ++ +CW DC R SS + D L
Sbjct: 4 SPWIIIFLLSVIVLVFVASADTNARHCWPQWDCRRLSSFGLSGTLSGDIQSLSELQYLDL 63
Query: 216 DYNLMNRTPMQSETYSLDNEMNMKTNSNQLN 124
YN R P+ S +L N+ NSN+ N
Sbjct: 64 SYNKNLRGPLPSTIGTLSKLQNLSLNSNKFN 94
>07_03_0072 - 13051145-13052362
Length = 405
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 516 CSVGCSYRSSKWSCNRGYGRSEGR 445
C G R S W C RGY RS+ R
Sbjct: 208 CLAGTRPRCSAWQCRRGYWRSQRR 231
>04_04_0072 +
22524974-22525310,22526334-22526552,22526826-22527532,
22527664-22528482
Length = 693
Score = 30.3 bits (65), Expect = 0.98
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -3
Query: 387 RNVLRYSLSVSHVGWSNQRSSGY-CWNSCDCTRFSSNYKGSSDEYDRFEREHLARFGRDY 211
RNVL S+S + GW+ + W+ + S + +SDE D R +L R + +
Sbjct: 624 RNVLAPSVSEASSGWTGREGGVVPVWSPPAASDHSETF--ASDEADISSRSYLDRHPQSH 681
Query: 210 NLMN 199
LMN
Sbjct: 682 RLMN 685
>05_04_0410 + 21053952-21054014,21054127-21054160,21054267-21054448
Length = 92
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -3
Query: 516 CSVGCSYRSSKWSCNRGYGRSEGRCCYQRTQC----PAGDINLCSVWRNVLRYS 367
C C YR SK + R+ G CC QR C +G+ N+C + N+ ++
Sbjct: 34 CGAKCGYRCSKSGRPKMCLRACGTCC-QRCGCVPPGTSGNENVCPCYANMTTHN 86
>01_01_0543 +
3985771-3985866,3985965-3986145,3986668-3986780,
3986854-3987190,3987602-3987603,3987661-3987743,
3988017-3988116,3988330-3988463,3988711-3988788,
3989333-3989387,3990159-3990239,3990369-3990567,
3990609-3990699,3990770-3990892,3991440-3991528,
3992450-3992539,3992619-3992792,3992911-3993035,
3993246-3993372,3993826-3993998
Length = 816
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -3
Query: 282 NYKGSSDEYDRFEREHLARFGRDYNLMNRTPMQSETYSLDNEMNMKTNSNQ 130
+Y D +HL+ FG D++ + +T M + LD+ N N Q
Sbjct: 276 SYPEDDSVEDPLLAQHLSHFGIDFSSLQKTEMTTAERELDHNTNYDWNRIQ 326
>11_06_0507 +
24402239-24402297,24402686-24402753,24403704-24403785,
24403894-24403945,24405368-24405413,24405568-24405626,
24405736-24405803,24406009-24406119,24406236-24406312,
24406478-24406554
Length = 232
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/45 (24%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = -3
Query: 294 RFSSNYKGSS--DEYDRFEREHLARFGRDYNLMNRTPMQSETYSL 166
++ S+ +G + D + +F ++++ +G D N+ NR P++++ +L
Sbjct: 21 QYQSHIRGLNAYDRHKKFMKDYVQFYGHDKNVDNRAPIKTDKDTL 65
>09_04_0393 + 17255315-17256019,17256107-17257909
Length = 835
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Frame = -3
Query: 369 SLSVSHVGWSNQRSSGYCWNSCDCTRFSSNYKGSSDEYDRFEREHLARFGRDYNLM--NR 196
S SV H S++ S N+ NY+ +E H RF D + + N
Sbjct: 104 SFSVGHTRHSSEDLSSLTINNLRINHREDNYQSQFEEKRIHSHGHTRRFSEDLSSLKIND 163
Query: 195 TPMQSETYSLDNEMNMK 145
E + DN++ K
Sbjct: 164 LCANKEEENYDNQLERK 180
>08_02_0773 + 21043553-21043813,21044775-21045203
Length = 229
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 465 YGRSEGRCCYQRTQCPAGDINLCSVWRN 382
Y ++ CCY R+ PA D + +W N
Sbjct: 40 YCDTKQSCCYPRSGKPAADFGIHGLWPN 67
>01_06_0639 + 30772804-30772904,30773386-30775675
Length = 796
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = -3
Query: 285 SNYKGSSDEY---DRFEREHLARFGRDYN 208
+N GS+ EY RF +EH A F + YN
Sbjct: 296 ANRPGSTSEYPNPSRFNKEHAANFQQGYN 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,559,895
Number of Sequences: 37544
Number of extensions: 185193
Number of successful extensions: 518
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -