Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323F02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z98877-3|CAB54472.2|  537|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    28   3.5  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF078784-2|AAK18966.1|  258|Caenorhabditis elegans Hypothetical ...    28   4.7  
AC024791-23|AAM81102.1|  346|Caenorhabditis elegans Rnp (rrm rna...    28   4.7  
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical
           protein B0207.5 protein.
          Length = 3279

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 318 CWNSCDCTRFSSNYKGSSDEYDRFEREHLARFGRDYNLMNRTP 190
           C  S DC+   +  + + +EY  ++RE L R G D++  N  P
Sbjct: 234 CLKSIDCSSMGNVDELTDEEYKVYQRECLNRPGNDFDCPNTDP 276


>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 519 RCSVGCSYRSSKWSCNRGYGRSEGRCCYQRTQCPA-GDINLCS 394
           +C +GCS       C +G+ R+    C   T+CPA G    CS
Sbjct: 194 KCDIGCS-------CKKGFLRNRQGQCVNPTECPATGSTLTCS 229


>U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical
           protein F52C9.5 protein.
          Length = 618

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 438 SSTGLRSCRSPCCNSICCSYSC 503
           SSTGL  C+S C NS    YSC
Sbjct: 154 SSTGLIHCKSHCLNSQIGVYSC 175


>Z98877-3|CAB54472.2|  537|Caenorhabditis elegans Hypothetical
           protein Y69H2.3a protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -3

Query: 519 RCSVGCSYRSSKWSCNRGYGRSEGRCCYQRTQCPA---GDINLCSV 391
           +C +GCS       C +G+ R+    C   T+CPA    D N C++
Sbjct: 194 KCDIGCS-------CKKGFLRNRQGQCVNPTECPATGKTDTNPCAL 232


>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
           protein F33C8.1b protein.
          Length = 1234

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 429 SFDSSTGLRSCRSPCCNSICCSYSC 503
           +F+    L SC  PC N +C + +C
Sbjct: 56  NFEFEKSLSSCDKPCYNGVCLNKAC 80


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
           protein F33C8.1a protein.
          Length = 1271

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 429 SFDSSTGLRSCRSPCCNSICCSYSC 503
           +F+    L SC  PC N +C + +C
Sbjct: 56  NFEFEKSLSSCDKPCYNGVCLNKAC 80


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
           protein.
          Length = 1329

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 429 SFDSSTGLRSCRSPCCNSICCSYSC 503
           +F+    L SC  PC N +C + +C
Sbjct: 56  NFEFEKSLSSCDKPCYNGVCLNKAC 80


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 510 VGCSYRSSKWSCNRGYGRSEGRCCYQR 430
           V C   SS   C+ GY +  G CC +R
Sbjct: 347 VPCQSSSSGCGCSSGYSQCGGSCCRRR 373


>AF078784-2|AAK18966.1|  258|Caenorhabditis elegans Hypothetical
           protein H34I24.1 protein.
          Length = 258

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 462 GRSEGRCCYQRTQCPAGDINLCSVWRNVLR-YSLSVSHVGWSNQRSSGYCWNSCDCTRFS 286
           G+   +C Y+  +  AGD   C+ ++ +   Y L  S   W N++++G   ++CD  R +
Sbjct: 143 GQKTIKCKYECKEEGAGDD--CADYKLICNLYPLPESADLWWNKQTNGEAGSACDADRHA 200

Query: 285 SN 280
            N
Sbjct: 201 DN 202


>AC024791-23|AAM81102.1|  346|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform c protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 429 SFDSSTGLRSCRSPCCNSICCS 494
           S+ SSTG+R C S  C S  CS
Sbjct: 301 SYLSSTGIRQCNSSKCISCVCS 322


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 519 RCSVGCSYRSSKWSCNRGYGRSEGRCCYQRTQCPA 415
           +C +GCS       C +G+ R+    C   T+CPA
Sbjct: 194 KCDIGCS-------CKKGFLRNRQGQCVNPTECPA 221


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 93  VVWF*LINVGS*VDCYSSSCSFRYQGNKFQTASAF 197
           ++W  L  V   + C+S +C  R + N +QTA A+
Sbjct: 106 LIWLALFAVAILLVCFSPTCVLRAKPNWWQTAVAY 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,485,117
Number of Sequences: 27780
Number of extensions: 179832
Number of successful extensions: 622
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)