Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323F01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   3.0  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   6.8  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    25   9.0  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   9.0  

>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 242 TLQTETRKYRNHLANIVIYVRPK 174
           T+  E  K + HL++  IY++PK
Sbjct: 395 TISDEAEKLKKHLSSFQIYLKPK 417


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 248 CPTLQTETRKYRNHLANIVIYVRPKKL 168
           C TL TE+  +  +L N+V    P ++
Sbjct: 456 CRTLSTESLNFSTNLNNVVFVANPSEI 482


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 362 AHSPPGVKWLLEPIDIHNVNAPPTLR 285
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 357 VSSSTHLSNKKKNLAWNSKSYFSVGY*IIQSIIVQRSLCNSYQ 485
           +S+S HLS++   LA   ++  +    + +S    ++LCN++Q
Sbjct: 545 ISNSEHLSSQLSTLAAEKEAAVATNNELSESKNSLQTLCNAFQ 587


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 447 TELFNSRRKNMTCYSKLSFFFYCLDGWTSSQPT 349
           T  FN+  +N  CY KL+   YC    T   P+
Sbjct: 144 TRFFNNDNENTRCYVKLN---YCYPDCTEITPS 173


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 371 GGRAHSPPGVKWLLEPIDIHN 309
           GG  H P  V WLL P DI++
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,523
Number of Sequences: 5004
Number of extensions: 38251
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)