Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323F01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z83120-9|CAB05589.2|  773|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81515-11|CAB04199.2|  773|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.    27   8.1  
AF011893-1|AAC27124.1|  773|Caenorhabditis elegans maternal-effe...    27   8.1  

>AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical
           protein T01G6.6 protein.
          Length = 403

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 519 HXQYYGR-RLQHADNYYKESVAQLSTELFNSRRKNMTCYSKLSFFFYC 379
           H  ++G    +    +++ S+ + + E F   R N TC  KL+  FYC
Sbjct: 17  HGNHFGAVSCRACSAFFRRSILEKNAENFKCLRGNNTCEVKLAGKFYC 64


>Z83120-9|CAB05589.2|  773|Caenorhabditis elegans Hypothetical
           protein R06A4.7 protein.
          Length = 773

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 233 TETRKYRNHLANIVIYVRPKKLCSFKNCKRRLINRYKISDA 111
           +   +YR  L   +   R     SFKNC++   N YK+SD+
Sbjct: 98  SSVNEYRRRLQENLGEGRTIAKFSFKNCEKYEENDYKVSDS 138


>Z81515-11|CAB04199.2|  773|Caenorhabditis elegans Hypothetical
           protein R06A4.7 protein.
          Length = 773

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 233 TETRKYRNHLANIVIYVRPKKLCSFKNCKRRLINRYKISDA 111
           +   +YR  L   +   R     SFKNC++   N YK+SD+
Sbjct: 98  SSVNEYRRRLQENLGEGRTIAKFSFKNCEKYEENDYKVSDS 138


>Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical
           protein C47E8.7 protein.
          Length = 720

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 206 LANIVIYVRPKKLCSFKNCKR 144
           LA+ + Y++PKKL +FK  KR
Sbjct: 405 LADYLKYMKPKKLAAFKGFKR 425


>AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.
          Length = 720

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 206 LANIVIYVRPKKLCSFKNCKR 144
           LA+ + Y++PKKL +FK  KR
Sbjct: 405 LADYLKYMKPKKLAAFKGFKR 425


>AF011893-1|AAC27124.1|  773|Caenorhabditis elegans maternal-effect
           sterile 2 protein.
          Length = 773

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 233 TETRKYRNHLANIVIYVRPKKLCSFKNCKRRLINRYKISDA 111
           +   +YR  L   +   R     SFKNC++   N YK+SD+
Sbjct: 98  SSVNEYRRRLQENLGEGRTIAKFSFKNCEKYEENDYKVSDS 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,042,187
Number of Sequences: 27780
Number of extensions: 221008
Number of successful extensions: 337
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)