Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323E12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    47   2e-06
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    46   3e-06
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    40   2e-04
SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.7  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    26   3.9  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   6.8  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 19/46 (41%), Positives = 31/46 (67%)
 Frame = +2

Query: 11  DKAKMEEALXAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 148
           DK  +++A+   I+WL+ N  A  +EY+ ++K LE V  PI+AK+Y
Sbjct: 564 DKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIY 609


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 18/46 (39%), Positives = 31/46 (67%)
 Frame = +2

Query: 11  DKAKMEEALXAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 148
           DK  +++A+   I+WL+ N  A  +E++ ++K LE V  PI+AK+Y
Sbjct: 564 DKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIY 609


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +2

Query: 8   DDKAKMEEALXAAIKWLE-DNQDAESEEYKKQKKTLEDVVQPIIAKLY 148
           +DK  + +A+    +WLE   +DA  EE++ Q++ L+ VV PI  KLY
Sbjct: 594 EDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641


>SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = +2

Query: 5   DDDKAKMEEALXAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAK 142
           D+   + E+ L   ++ ++ N+  ESE+YK  +++L  V + ++A+
Sbjct: 38  DEYSKESEDVLENGLEHVQSNEFTESEDYKSIERSLA-VTEAVMAR 82


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 26  EEALXAAIKWLEDNQDAESEEYKKQKKTLEDVVQPII 136
           +E L     W+E N+D  +EE  K  K  ED+ + I+
Sbjct: 410 DEILTKTQVWMELNKDYLAEEEAKNLKLQEDLKKGIV 446


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +2

Query: 11  DKAKMEEALXAAIKWLE---DNQDAESEEYKKQKKTLED 118
           D  + ++ L   I+ LE   +  ++E+E+Y+KQK+ LE+
Sbjct: 150 DLLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEE 188


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 323 YLLYECSEWACATNLTESRSDRVSAVAHARVSE 421
           YLLY+ ++W     L +    RV+    AR ++
Sbjct: 848 YLLYQKTQWHVCKTLADQDKQRVTGDPEARATK 880


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 11  DKAKMEEALXAAIKWLEDNQDAESEEYKKQKKTLED 118
           D+  ++E + A ++  ED+QD   +  K +++ +ED
Sbjct: 723 DELGIDEEIMAELRGDEDDQDENDQVTKVEEEHMED 758


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,848,194
Number of Sequences: 5004
Number of extensions: 32394
Number of successful extensions: 84
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)