Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323E09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66524-3|CAB54303.1|  475|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z68104-1|CAA92112.1|  866|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U50301-12|AAB37053.2|  486|Caenorhabditis elegans Hypothetical p...    27   8.1  
AL034489-2|CAA22462.1|  144|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z66524-3|CAB54303.1|  475|Caenorhabditis elegans Hypothetical
           protein T13H5.6 protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 282 IFNVLNIYITYLFSILIYINKLTLPMR-NRLSIINYGMLC 398
           I +++   +T +FSIL+ +     P+R N  SI +Y  +C
Sbjct: 139 ILHIIFAIVTSIFSILVIVELRKKPIRSNSQSINHYAQIC 178


>Z68104-1|CAA92112.1|  866|Caenorhabditis elegans Hypothetical
           protein F08B12.1 protein.
          Length = 866

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = +2

Query: 128 IRYMGYSFFIYLTLSI*FMILQINLGIYVFTLLFEIC 238
           ++YM YS++  L ++  F++L +   I++F +L+ IC
Sbjct: 422 LKYMQYSWYASLVITSLFILLAL---IFLFGVLYGIC 455


>U50301-12|AAB37053.2|  486|Caenorhabditis elegans Hypothetical
           protein F20D6.10 protein.
          Length = 486

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 234 SAAKNTTKNF*IFKVNIFNVLNI--YITYLFSILIYINKLTL 353
           S AKN  ++  IF+ N FNV  I  Y+  L  +LI  + L L
Sbjct: 74  SCAKNIFRDCLIFQFNHFNVTLIFDYVVILMMVLILFSVLCL 115


>AL034489-2|CAA22462.1|  144|Caenorhabditis elegans Hypothetical
           protein Y7A5A.2 protein.
          Length = 144

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 236 RFQIAM*RHKFPNLFVKS*IILIMLNK*RMN 144
           +F   + RH+ PNLF  S + L MLN   MN
Sbjct: 86  QFSEVLQRHQKPNLFGNSIVSLRMLNSLEMN 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,230,461
Number of Sequences: 27780
Number of extensions: 189065
Number of successful extensions: 353
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)