Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323E08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    28   3.5  
AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    28   3.5  
Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U55856-7|AAA98025.1|  249|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF098995-14|AAC67475.1|  327|Caenorhabditis elegans F-box b prot...    27   8.1  

>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 322 SNSTVAETGLSLNR--NIC*IS*CQNAFKQIHHFSIANCDLSNLYF 191
           SNST  E G SL+   +IC  + CQN  K   + +  +CD SN  F
Sbjct: 638 SNSTGIELGCSLSNELDICEPNPCQNFGKCSKNLNSFDCDCSNTNF 683


>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 467 RFYLLYSHYSVYFFLFTSFAYSFIFTLKFHVILLIS*DDLFLTF 336
           R Y +Y  +  YFFL T+   S I+T+    + +I+  + FL F
Sbjct: 161 RSYYVYHSHGDYFFLDTTIKRSLIYTILAPTLSVITAMNSFLNF 204


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 467 RFYLLYSHYSVYFFLFTSFAYSFIFTLKFHVILLIS*DDLFLTF 336
           R Y +Y  +  YFFL T+   S I+T+    + +I+  + FL F
Sbjct: 161 RSYYVYHSHGDYFFLDTTIKRSLIYTILAPTLSVITAMNSFLNF 204


>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -2

Query: 463 FIYYTV-IIVCIFFCSRVLL 407
           F+YYTV +I+C+FF S + L
Sbjct: 150 FVYYTVRVIICVFFSSILFL 169


>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 471 NSFLFIIQSL*CVFFFVHEFCLFVYFYF 388
           +  LF +  L C+  F+   CLF+Y+YF
Sbjct: 106 SQILFTMVVLACMTKFLSTLCLFLYYYF 133


>Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.10 protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 482 LVKQIRFYLLYSHYSVYFFLFTSFAYSFIFTLKFHVILL-IS*DDLFLTFNVLSFQ*YCC 306
           L  +++FYLL    +   F+F SF  + +F   FH+IL+ IS  +  L+    +F    C
Sbjct: 137 LCVEMQFYLL----APIIFIFLSFCSTGMFLAVFHLILISISLGNHLLSTEQAAFNNVFC 192

Query: 305 R 303
           R
Sbjct: 193 R 193


>U55856-7|AAA98025.1|  249|Caenorhabditis elegans Hypothetical
           protein F31E8.1 protein.
          Length = 249

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 491 DAFLVKQIRFYLLYSHYSVYFFLFTSFAYSF 399
           DA  V   R  L Y+H +  FF+F  F+ SF
Sbjct: 145 DASFVISTRMCLFYTHSNPDFFIFFLFSISF 175


>AF098995-14|AAC67475.1|  327|Caenorhabditis elegans F-box b protein
           protein 47 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 246 NAFWH*EIQQIFRFKDKPVSATVLLE*QHIKSK 344
           +AF H +   + ++  KP+ +T+LLE +H+ SK
Sbjct: 165 SAFQHIKKFSLRQYSHKPLDSTLLLELRHLLSK 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,342,699
Number of Sequences: 27780
Number of extensions: 194996
Number of successful extensions: 514
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)