Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323E08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   7.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 431 FFLFTSFAYSFIFTLKFHVI 372
           FF+F SFA+ F   ++F V+
Sbjct: 278 FFVFLSFAFIFATIIQFAVV 297


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 474 TNSFLFIIQSL*CVFFFVHEFCLFVYFYFEISCDIINL 361
           T S +F++    C FF + +  +F+Y  F     + NL
Sbjct: 81  TPSNMFVVNLAICDFFMMIKTPIFIYNSFNTGFALGNL 118


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = -2

Query: 478 LNKFVFIYYTVIIVCI--FFC 422
           LNK V ++YT +I  +  F C
Sbjct: 149 LNKVVSVFYTAVIPMLNPFIC 169


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 347 TNHLKRLIISHEIS 388
           +NHLK++ I H+I+
Sbjct: 163 SNHLKQIEIPHDIA 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,457
Number of Sequences: 438
Number of extensions: 2499
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)