Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323E04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    25   5.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.2  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   6.8  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   6.8  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   6.8  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   6.8  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.8  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 268 PKHPLFLLY*RRVCLPYSGGLRGLGDHSLGGQRVWEYV 155
           P+HPLFLLY         G +   G + LG     +YV
Sbjct: 264 PEHPLFLLYTSGSTGKPKGVVHCTGGYLLGAAATCKYV 301


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = -3

Query: 462  NSSVVLEQSTVSLFKEQNDSTLAPGFRSSRFLDDGVERCA*LVENNSVL 316
            +S++V+ Q   S FK++ND      FR S    D V   + LVEN S+L
Sbjct: 1577 DSAIVILQRDPSFFKDKNDF-----FRGSM---DAVLAISHLVENESIL 1617


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 450 VLEQSTVSLFKEQNDSTLAPGFRSSRFLDDG 358
           +  +ST+  F   N S+ AP F  S   +DG
Sbjct: 44  ISRESTMRNFNRSNISSTAPSFAESEDAEDG 74


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = -3

Query: 486  LINLAKK*NSSVVLEQSTVSLFKEQNDSTLAPGFRSSRFLDDGVE 352
            LI LAK+ +  V  + S  SLF  QND    PG       DD VE
Sbjct: 1694 LIVLAKQRSLPVTFDVSVYSLFLNQND---YPGATFLPTADDQVE 1735


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 324 SVLIPSSPVALLFLNFKLFQSTPYFFY 244
           ++L PS    +LFLN  L     +FF+
Sbjct: 616 TLLFPSKTTWVLFLNLTLLNFASFFFF 642


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 134 TTVVSMPHILPNPLPTQRMITEPP*SATIRKTYPTS 241
           ++ +++  + P    +   ITEPP SA +  T PT+
Sbjct: 682 SSTITVSDVYPKKPASPVEITEPPSSALVSATSPTT 717


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 419 LKRETVLCSRTTELFHFLAKFISCSRKSLQIAW 517
           +KRE++L         +L +F+  S+K   IAW
Sbjct: 348 VKRESLLLDEFESAIQYLNQFLKDSQKIQYIAW 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,358
Number of Sequences: 5004
Number of extensions: 44106
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)