Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323E04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 40 0.001
07_03_1172 - 24521582-24521714,24522028-24522200,24522459-245226... 33 0.14
11_04_0401 - 17251759-17252208,17252545-17253022,17254235-172542... 33 0.18
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 31 0.56
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 30 1.3
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 29 3.0
01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664 28 4.0
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 28 5.2
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +1
Query: 334 NQLCTTLNTVIQKTTRPEAWSKGTVILFFKKGDRALLKNYRAISLLSQIYKLFSKVLTNR 513
+ + + Q PE + ++L KK LK+YR ISL + +YK+ SK L NR
Sbjct: 928 SDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNR 987
Query: 514 L 516
L
Sbjct: 988 L 988
>07_03_1172 -
24521582-24521714,24522028-24522200,24522459-24522677,
24523878-24524114,24524332-24524469
Length = 299
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 88 IYLIV--IAHGPLTVESYYRSLYASHTPKPFAHP 183
++LI I H P + + YYRSL S++P P A+P
Sbjct: 31 VFLIATPIHHDPRSTKGYYRSLSVSNSPSPCANP 64
>11_04_0401 -
17251759-17252208,17252545-17253022,17254235-17254290,
17254489-17255019
Length = 504
Score = 32.7 bits (71), Expect = 0.18
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 325 IVLNQLCTTLNTVIQKTTRPEAWSKGTVILFFKKGDRALLKNYRAISLLSQIYKLFSKVL 504
I+ + + + Q P + ++L LK++R ISL + +YK+ K L
Sbjct: 422 IMKQDIVNPVTKIFQTGLTPMGVNDTAIVLILMSDQPVDLKDFRPISLCNVVYKVVFKCL 481
Query: 505 TNRL 516
NRL
Sbjct: 482 VNRL 485
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 31.1 bits (67), Expect = 0.56
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 442 LKNYRAISLLSQIYKLFSKVLTNRL 516
L +R ISL + +YK+ SKVL NRL
Sbjct: 184 LSKFRPISLCNVLYKIASKVLANRL 208
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 385 EAWSKGTVILFFKKGDRALLKNYRAISLLSQIYKLFSKVLTNRL 516
E ++ ++L K G + YR ISL + K+ SKVL RL
Sbjct: 966 ERINRAYIVLIQKPGKENTVDGYRPISLQNCSVKILSKVLATRL 1009
>02_05_0417 -
28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 308 DGISTELFSTNYAQ--RSTPSSKKRLDRKPGARVLSFCSLKRETV 436
D I+ EL + A RS PS L KPG R + FCS KR V
Sbjct: 648 DFINKELIQFSMADLLRSIPSMVDGL--KPGQRKILFCSFKRNLV 690
>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
Length = 582
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 291 TELQEMTESVQNCSQPIMHNAQHRH 365
++ QE+ S+Q+ P+ H+ QHRH
Sbjct: 386 SQSQELRLSLQSLPDPMFHHQQHRH 410
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Frame = +2
Query: 335 TNYAQRSTPSSK-KRLDR-----KPGARVLSFCSLKR 427
T Y TP K +RLD+ +PG++++ FCS KR
Sbjct: 400 TQYVDVITPPEKSRRLDQILRSQEPGSKIIIFCSTKR 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,556,009
Number of Sequences: 37544
Number of extensions: 278300
Number of successful extensions: 670
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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