Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323E04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    55   4e-08
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    55   4e-08
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    55   4e-08
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    41   5e-04
Z74043-12|CAA98548.1|  503|Caenorhabditis elegans Hypothetical p...    31   0.50 
Z74040-7|CAA98515.1|  503|Caenorhabditis elegans Hypothetical pr...    31   0.50 
AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical ...    27   6.2  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 25/63 (39%), Positives = 35/63 (55%)
 Frame = +1

Query: 328 VLNQLCTTLNTVIQKTTRPEAWSKGTVILFFKKGDRALLKNYRAISLLSQIYKLFSKVLT 507
           V++ +    N  +     P+ W      L FKKGDR  L+NYR I LL  +YK+F+K L 
Sbjct: 411 VIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLL 470

Query: 508 NRL 516
           NR+
Sbjct: 471 NRM 473


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 25/63 (39%), Positives = 35/63 (55%)
 Frame = +1

Query: 328 VLNQLCTTLNTVIQKTTRPEAWSKGTVILFFKKGDRALLKNYRAISLLSQIYKLFSKVLT 507
           V++ +    N  +     P+ W      L FKKGDR  L+NYR I LL  +YK+F+K L 
Sbjct: 582 VIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLL 641

Query: 508 NRL 516
           NR+
Sbjct: 642 NRM 644


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 25/63 (39%), Positives = 35/63 (55%)
 Frame = +1

Query: 328 VLNQLCTTLNTVIQKTTRPEAWSKGTVILFFKKGDRALLKNYRAISLLSQIYKLFSKVLT 507
           V++ +    N  +     P+ W      L FKKGDR  L+NYR I LL  +YK+F+K L 
Sbjct: 321 VIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLL 380

Query: 508 NRL 516
           NR+
Sbjct: 381 NRM 383


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 355 NTVIQKTTRPEAWSKGTVILFFK-KGDRALLKNYRAISLLSQIYKLFSKVLTNRL 516
           N  +     P+ W K  VI+  K K D A+  +YR ISLLS I KL  K +  R+
Sbjct: 372 NVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRI 426


>Z74043-12|CAA98548.1|  503|Caenorhabditis elegans Hypothetical
           protein T19B10.1 protein.
          Length = 503

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 148 YASHTPKPFAHPENDHRAPLVRHYTEDIPDVSI 246
           Y S  P P AHP   +  P+V   TED+P V I
Sbjct: 32  YGSKLPGPPAHPIFGNLGPIVGKKTEDLPSVFI 64


>Z74040-7|CAA98515.1|  503|Caenorhabditis elegans Hypothetical
           protein T19B10.1 protein.
          Length = 503

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 148 YASHTPKPFAHPENDHRAPLVRHYTEDIPDVSI 246
           Y S  P P AHP   +  P+V   TED+P V I
Sbjct: 32  YGSKLPGPPAHPIFGNLGPIVGKKTEDLPSVFI 64


>AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical
           protein Y34D9A.3 protein.
          Length = 639

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +2

Query: 275 LKFKNNRATGDDGISTELFSTNYAQRSTPSSKKRLDRKPGARVLSFCSLKRETVLCSRTT 454
           LKF    A G D +   +F++   Q     ++K+LD  P   VL F     +  L S T+
Sbjct: 71  LKFMKKTAIGQDEVINRIFTSLLKQILRDETRKKLD--PHV-VLDFLDAGDKLFLDSETS 127

Query: 455 ELFHFLAK--FISCSRKS 502
           +  + + K  F+  +RKS
Sbjct: 128 KKAYAILKLYFLCRNRKS 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,815,551
Number of Sequences: 27780
Number of extensions: 243048
Number of successful extensions: 628
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)