Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323E04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   3.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   3.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   5.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 89  IILTLLCSSTMNLQYF 42
           I LT+  S  MNLQYF
Sbjct: 130 IRLTITASCPMNLQYF 145


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 89  IILTLLCSSTMNLQYF 42
           I LT+  S  MNLQYF
Sbjct: 130 IRLTITASCPMNLQYF 145


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 115 PLTVESYYRSLYASHTPKPFAHP 183
           PL   SY  ++   HTP    HP
Sbjct: 447 PLAHSSYPAAIQIGHTPHHHPHP 469


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 89  IILTLLCSSTMNLQYF 42
           I LT+  S  MNLQYF
Sbjct: 69  IRLTITASCPMNLQYF 84


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +2

Query: 260 VLWNSLKFKNNRATGDDGISTELFSTNYAQRSTPSSKKRLDRKPG 394
           +L     +KNN  +  D    ++F T       PSS   + +K G
Sbjct: 54  ILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLNVISKKVG 98


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +2

Query: 260 VLWNSLKFKNNRATGDDGISTELFSTNYAQRSTPSSKKRLDRKPG 394
           +L     +KNN  +  D    ++F T       PSS   + +K G
Sbjct: 54  ILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLNVISKKVG 98


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +2

Query: 260 VLWNSLKFKNNRATGDDGISTELFSTNYAQRSTPSSKKRLDRKPG 394
           +L     +KNN  +  D    ++F T       PSS   + +K G
Sbjct: 54  ILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLNVISKKVG 98


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 202  PLVRHYTEDIPDVSIEEIRGA 264
            PL+    ED+P +  E++R A
Sbjct: 1101 PLLTQTMEDVPSIPPEDVRCA 1121


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 202  PLVRHYTEDIPDVSIEEIRGA 264
            PL+    ED+P +  E++R A
Sbjct: 1097 PLLTQTMEDVPSIPPEDVRCA 1117


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 395 LQASGLVVFWMTVLSVVHNWLRTIL 321
           LQA+    FW T   + HN  +T L
Sbjct: 194 LQAANACRFWPTGRGIYHNDDKTFL 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,430
Number of Sequences: 438
Number of extensions: 2826
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)