Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323E03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   3.0  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   3.9  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   9.0  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   9.0  
SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2...    25   9.0  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   9.0  

>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 250 LGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSR 357
           LG++    M +  H   + D+   +LGR+ P+LCSR
Sbjct: 177 LGISSKYAMLYTSHSFNLVDK---LLGRINPLLCSR 209


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 376 NKVTLYKTCIRPVMTYASVVFAHAARTHLKSLQVI 480
           N +T+ ++ +RPV TY S        +HL  + V+
Sbjct: 220 NDITIKESDVRPVSTYHSFALTSDNNSHLYGICVV 254


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 124 KRGRP-PNITSSIPLRSRRANTSAVSP 201
           KR RP PNI +S P  +R  +T  V+P
Sbjct: 128 KRDRPLPNIRNSAPSATRSHSTPCVAP 154


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 124 KRGRPPNITSSIP 162
           KRGRPP I SS P
Sbjct: 125 KRGRPPKIKSSSP 137


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 417 DVCKRSVRSRSPHPLEIPSGYPITILQDSRRSALV 521
           DV KRS  ++S  P ++P G   TI ++  R  LV
Sbjct: 441 DVVKRSADAKSLQPFKLPGG---TIEENRSRHPLV 472


>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
           L22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +1

Query: 148 TSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFIL 327
           T+ +  R      + +   TL+   I WV K KYL   +  G   R   ++ R R   +L
Sbjct: 151 TALVSARENAVREAGLDESTLYVDQI-WVGKAKYLKKLITMGRGGRAIERSPRVRVTVVL 209


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 115 PLRFSWG*CLFATSGTTVPWWLL 47
           PL F W   ++ ++    PWW++
Sbjct: 385 PLTFDWQQVVYNSNPLASPWWVI 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,711
Number of Sequences: 5004
Number of extensions: 47346
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)