Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323E03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834... 30 0.98
11_01_0022 + 151233-151515,152632-152852,153579-153656,154558-15... 29 2.3
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 2.3
03_05_0431 + 24221881-24224586 29 3.0
09_04_0289 + 16424385-16424447,16424678-16424766,16424925-164250... 28 4.0
10_05_0101 - 9167383-9167679,9167883-9167961,9168161-9168326,916... 27 6.9
04_03_0541 - 16934460-16934573,16934663-16934738,16934815-169350... 27 6.9
02_04_0664 + 24826714-24826842,24826912-24826947,24827551-248276... 27 6.9
01_06_1351 - 36510599-36510712,36510802-36510877,36510954-365112... 27 6.9
01_06_0225 - 27675363-27675464,27675727-27675823,27676145-276762... 27 6.9
11_05_0031 + 18492639-18492848,18493482-18493487 27 9.1
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 27 9.1
10_01_0175 + 1959565-1960431,1960886-1960955,1961537-1961704,196... 27 9.1
04_04_1399 - 33249210-33249359,33249521-33249597,33249735-332498... 27 9.1
04_04_1328 - 32682087-32682200,32682290-32682365,32682442-326826... 27 9.1
>12_02_0667 +
21682386-21682944,21683042-21683201,21683419-21683467,
21683570-21683683,21683794-21684294,21684594-21684980,
21685074-21685172,21685380-21685478,21685817-21685890,
21686387-21687023
Length = 892
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -3
Query: 216 AKESDGTNGGGVCAPTTEW---DARSDVRRATPFEE 118
++E G GGG P ++ D+RS RR+T F+E
Sbjct: 3 SREESGNGGGGGATPAADYRSSDSRSSSRRSTRFKE 38
>11_01_0022 +
151233-151515,152632-152852,153579-153656,154558-154674,
155970-156316,156504-157032
Length = 524
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 477 NLKGFQVGAGCVSEHYACIR 418
N +QVG GC+S+ Y C+R
Sbjct: 348 NATNYQVGTGCLSDIYFCLR 367
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +1
Query: 1 YSCRKMSLLHRRLQIA----VATMGQWFRKWRIDINPTKSAAVLFKRGR 135
+S L+HR L A VA + R WR + P + AA L RGR
Sbjct: 89 FSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGR 137
>03_05_0431 + 24221881-24224586
Length = 901
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 314 ARSRTVFIWG-RNVIPLSRVTPRYLTFETHGMG 219
AR+RTVF WG +V + + PR + F++ G G
Sbjct: 175 ARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAG 207
>09_04_0289 +
16424385-16424447,16424678-16424766,16424925-16425068,
16425713-16426189,16426320-16426527
Length = 326
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = -1
Query: 260 VTPRYLTFETHGMGWPK--RVMGLTAEVFARLLRSGMLEVMFGGRPLLKSTAALFVGLMS 87
+TPR +F G+G+ + R+ + E F +G ++ + P + S + L
Sbjct: 150 LTPRETSFLLKGLGFTRSTRIYLVAGEAFG----NGSMQALMDDFPNIYSHSTLATK-EE 204
Query: 86 IRHFRNHCPMVATAIWSRR*SSDIFLH 6
+ FRNH M+A + SD+FL+
Sbjct: 205 LEPFRNHQNMLAGLDYIVALQSDVFLY 231
>10_05_0101 -
9167383-9167679,9167883-9167961,9168161-9168326,
9169201-9169299,9169969-9171361
Length = 677
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 387 SLQNLYTPRHDVCKRSVRSR 446
++QNLY PR D+C+ S S+
Sbjct: 5 TIQNLYAPRADLCEPSCSSK 24
>04_03_0541 -
16934460-16934573,16934663-16934738,16934815-16935071,
16935161-16935259,16935338-16935536,16935620-16935833,
16935988-16936056,16936144-16936468,16936583-16936753,
16936833-16936997,16937073-16937709,16937776-16937837,
16938098-16938169,16938689-16938724,16938794-16938922
Length = 874
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 109 AAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPI-PW 231
A+ LFKR NIT+++ + R A T + I P+ PW
Sbjct: 462 ASNLFKRAFKTNITAAVKIAIRAAVTKVIDTIEDIQGPLHPW 503
>02_04_0664 +
24826714-24826842,24826912-24826947,24827551-24827622,
24827882-24827943,24828010-24828646,24828722-24828886,
24828966-24829136,24829251-24829575,24829663-24829731,
24829886-24830099,24830183-24830381,24830460-24830558,
24830648-24830904,24830981-24831056,24831146-24831259
Length = 874
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 109 AAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPI-PW 231
A+ LFKR NIT+++ + R A T + I P+ PW
Sbjct: 462 ASNLFKRAFKTNITAAVKIAIRAAVTKVIDTIEDIQGPLHPW 503
>01_06_1351 -
36510599-36510712,36510802-36510877,36510954-36511210,
36511300-36511398,36511477-36511675,36511759-36511972,
36512127-36512195,36512283-36512607,36512722-36512892,
36512972-36513136,36513212-36513848,36513915-36513976,
36514237-36514308,36514912-36514947,36515017-36515145
Length = 874
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 109 AAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPI-PW 231
A+ LFKR NIT+++ + R A T + I P+ PW
Sbjct: 462 ASNLFKRAFKTNITTAVKIAIRAAVTKVIDTIEDIQGPLHPW 503
>01_06_0225 -
27675363-27675464,27675727-27675823,27676145-27676218,
27677361-27677444,27677728-27678489,27679515-27679565
Length = 389
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 222 GLAKESDGTNGGGVCAPTTEWDAR 151
G +K DG NGG + AP E D++
Sbjct: 120 GESKPGDGGNGGSISAPQDESDSK 143
>11_05_0031 + 18492639-18492848,18493482-18493487
Length = 71
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 216 PAHSVGLEGQISRRHPRQRDDIPS 287
P+H G +G +S RH R R P+
Sbjct: 5 PSHPAGAQGAVSWRHARGRQTTPA 28
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 49 VATMGQWFRKWRIDINPTKSAAVLFK 126
V T G+W R +++D NP A ++ K
Sbjct: 197 VVTFGEWSRYFQVDFNPCNYAFLVAK 222
>10_01_0175 +
1959565-1960431,1960886-1960955,1961537-1961704,
1962570-1962676
Length = 403
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 387 SLQNLYTPRHDVCKRSVRSRS 449
++QNLY PR ++C+ S S+S
Sbjct: 5 TIQNLYAPRANLCEPSYSSKS 25
>04_04_1399 -
33249210-33249359,33249521-33249597,33249735-33249814,
33249904-33250094,33250183-33250469,33250595-33250721,
33250878-33250994,33251085-33251198,33251510-33251671,
33252909-33252974,33253098-33253269,33253377-33253584,
33253728-33253776,33254132-33254305
Length = 657
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 112 AVLFKRGRPPNITSSIPLRSRRANTSAVS-PITLF-GQPIP--WVSKVKYLGVTLDRGMT 279
AVL K PP +++ L++R T P F G+P+ WV V+YL LD G++
Sbjct: 2 AVLHKVAAPPAQSTASKLKARVKETFFPDDPFRGFKGKPLTTKWVMAVQYLFPILDWGIS 61
Query: 280 F 282
+
Sbjct: 62 Y 62
>04_04_1328 -
32682087-32682200,32682290-32682365,32682442-32682698,
32682788-32682886,32682965-32683163,32683247-32683460,
32683615-32683683,32683772-32684096,32684211-32684381,
32684461-32684625,32684701-32684814,32685228-32685336,
32685403-32685464,32685726-32685797,32686401-32686436,
32686506-32686634
Length = 736
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 85 IDINPTKSA---AVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPI-PW 231
+DI+ ++A + LFKR NIT+++ + R A T + I P+ PW
Sbjct: 313 VDISTMQTAIHTSNLFKRAFKTNITAAVKIAIRAAVTKVIDTIEDIQGPLHPW 365
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,339,102
Number of Sequences: 37544
Number of extensions: 384540
Number of successful extensions: 1084
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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