Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323E03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 43 2e-04
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 40 0.001
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 36 0.013
AF022982-2|AAY86314.1| 130|Caenorhabditis elegans Hypothetical ... 29 2.7
Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical pr... 27 6.2
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 27 8.1
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 27 8.1
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 27 8.1
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/97 (27%), Positives = 48/97 (49%)
Frame = +1
Query: 208 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 387
L G PI + + LG + + F H K + A F L ++ + +K + +
Sbjct: 136 LDGYPIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---IL 192
Query: 388 LYKTCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCR 498
LYKT IRP + Y +VV + ++ K+++ +Q+ F R
Sbjct: 193 LYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 41.5 bits (93), Expect = 4e-04
Identities = 26/97 (26%), Positives = 48/97 (49%)
Frame = +1
Query: 208 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 387
L G PI + + LG + + F H + + A F L ++ + +K + +
Sbjct: 166 LDGYPIERKAITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFNKYSTSNKKLM---IL 222
Query: 388 LYKTCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCR 498
LYKT IRP + Y +VV + ++ K+++ +Q+ F R
Sbjct: 223 LYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 39.5 bits (88), Expect = 0.001
Identities = 26/84 (30%), Positives = 41/84 (48%)
Frame = +1
Query: 220 PIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKT 399
PI + + LG+ D +TF+PHIK + + L R +L S L L+KT
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKT 244
Query: 400 CIRPVMTYASVVFAHAARTHLKSL 471
I P++ Y S V++ + L +L
Sbjct: 245 YILPLIEYGSAVYSPKPSSSLSTL 268
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 36.3 bits (80), Expect = 0.013
Identities = 31/101 (30%), Positives = 48/101 (47%)
Frame = +1
Query: 139 PNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAA 318
P ++ + L +R N S ++ G PI S V+ LG+ D + F HI V +
Sbjct: 946 PTKSALLALGTRNKNQS----YSVDGVPITPSSTVRDLGLITDCKLKFEHHIVKV---SC 998
Query: 319 FILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFA 441
+ R +L + S S + LYKT + P+M Y S V+A
Sbjct: 999 LAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMNYCSEVYA 1039
>AF022982-2|AAY86314.1| 130|Caenorhabditis elegans Hypothetical
protein T23B12.11 protein.
Length = 130
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 483 LDNLKGFQVGAGCVSEHYACIRHDGAYTSFVE 388
+DN F V AG EH +R G +T FVE
Sbjct: 48 VDNTADFNVSAGNTFEHTFEVRRKGYWTLFVE 79
>Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical
protein C06C6.7 protein.
Length = 935
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 136 PPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVK 246
PP S L ANT+ + +T G+P+ V K+K
Sbjct: 878 PPPTPSPATLTPTSANTTTAASVTPSGKPVSKVEKLK 914
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = +1
Query: 160 PLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHI 294
PL + T V P+T QP P+ + G+ M H+
Sbjct: 653 PLMKQEIKTETVEPVTSIAQPFPFNPMMGNHGLNFANHMLLNKHL 697
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = +1
Query: 160 PLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHI 294
PL + T V P+T QP P+ + G+ M H+
Sbjct: 675 PLMKQEIKTETVEPVTSIAQPFPFNPMMGNHGLNFANHMLLNKHL 719
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = +1
Query: 160 PLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHI 294
PL + T V P+T QP P+ + G+ M H+
Sbjct: 675 PLMKQEIKTETVEPVTSIAQPFPFNPMMGNHGLNFANHMLLNKHL 719
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,785,545
Number of Sequences: 27780
Number of extensions: 281080
Number of successful extensions: 694
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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