Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323E02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 32 0.045
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 32 0.060
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 31 0.079
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.32
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 29 0.32
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 28 0.73
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 28 0.97
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 28 0.97
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 27 1.7
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 27 1.7
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 27 1.7
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 3.0
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 3.9
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 25 5.2
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 25 5.2
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 5.2
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 25 6.8
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 25 6.8
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 25 9.0
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 9.0
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 9.0
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 9.0
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 9.0
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 9.0
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 25 9.0
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.0
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 9.0
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 32.3 bits (70), Expect = 0.045
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Frame = +3
Query: 147 NESKNDDNEVLSQAKNMERRLSEALSEYIDSKAELCGEQAKLELVANYNNPHSSQLSMNI 326
N+ K+ + E+ S + +E R + + ++ + G ++K+E N QL +NI
Sbjct: 286 NQIKSAE-ELDSAIQVLEERYRTMQRDEVKFQSAMSGMKSKMESRTNL----MKQLQVNI 340
Query: 327 LEAQTAVQLLEQEEGIINLQIENAIKEFVEDRTRIVEETALNAAL-AIREEVSNDLAYLL 503
E ++ +QLL+++ + Q+EN E + E L+ L I ++S +
Sbjct: 341 EEKESQLQLLKEKRDSLKYQVENQDISISEFEKMVSEREQLDRNLNMIGSKISELRKEVF 400
Query: 504 DT 509
DT
Sbjct: 401 DT 402
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 31.9 bits (69), Expect = 0.060
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Frame = +3
Query: 114 LYVSKKFDLKQNESK-NDDNEVLSQAKNMERRLSEALSEYIDSKAELCGEQAKLELVANY 290
LY S K N++K E+ + + + L+ +E + KAE+ + A L L+ Y
Sbjct: 1272 LYESNSVLRKDNDAKLGKIQELEKEVEKLNASLNPLQTEINELKAEIGAKTASLNLMKEY 1331
Query: 291 NNPHS--SQLSMNILEAQTAVQLLEQEEGIINLQIENAIKEFVEDRTRIVEETALNAALA 464
N+ Q +N E QL E ++ L+ E E T +T +
Sbjct: 1332 NSRWKLRFQSVLNKYERVDPTQLEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNS 1391
Query: 465 IREEVSN 485
+ EEV N
Sbjct: 1392 LNEEVEN 1398
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 31.5 bits (68), Expect = 0.079
Identities = 24/127 (18%), Positives = 57/127 (44%)
Frame = +3
Query: 108 FDLYVSKKFDLKQNESKNDDNEVLSQAKNMERRLSEALSEYIDSKAELCGEQAKLELVAN 287
+DL S++F+L + +D+ VL +K+ E L + S ++ L
Sbjct: 103 YDLKKSQQFELDTSRLSSDEESVLDYSKDSEDEQDYELRPRVSSS---WNNESYNRLPIK 159
Query: 288 YNNPHSSQLSMNILEAQTAVQLLEQEEGIINLQIENAIKEFVEDRTRIVEETALNAALAI 467
+ L + + + L + E +L+I++ IK +++ + +EE + + +
Sbjct: 160 TKD---GLLQNVVADVNNGEEFLSESESEASLEIDSDIK---DEKQKSLEEQKIAPEIPV 213
Query: 468 REEVSND 488
++++ ND
Sbjct: 214 KQQIKND 220
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.5 bits (63), Expect = 0.32
Identities = 30/91 (32%), Positives = 48/91 (52%)
Frame = -2
Query: 478 TSSLIANAALSAVSSTIRVRSSTNSLIAFSIWRFMIPSSCSRSWTAV*ASSMFMLS*LEC 299
TSS + ++ SA SS++ S+T+S +A S I SS S +++ +SS+ S
Sbjct: 105 TSSSLTSS--SATSSSLASSSTTSSSLASS----SITSSSLAS-SSITSSSLASSSTTSS 157
Query: 298 GLL*FATNSNFACSPHSSAFESIYSDRASES 206
L +TNS + +P SSA S S A+ +
Sbjct: 158 SLASSSTNSTTSATPTSSATSSSLSSTAASN 188
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 29.5 bits (63), Expect = 0.32
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +3
Query: 297 PHSSQLSMNILEAQTAVQLLEQEE-----GIINLQIENAIKEFVEDRTRIVEETALNAAL 461
P S + +LE V ++ E GI N + +K+F +D R+V E+ + A
Sbjct: 239 PASVPALIKVLENTEEVPMVRHEAAEALGGIANDECLPVLKKFSKDDVRVVAESCIVALD 298
Query: 462 AIREEVSNDLAY 497
I E S D+ Y
Sbjct: 299 MIEYEKSGDMEY 310
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 28.3 bits (60), Expect = 0.73
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Frame = +3
Query: 123 SKKFDLKQNESKNDDNEVLSQAKNMERRLSEALSEYIDSKAELCGEQAKLELVANYNNPH 302
S KQN S+NDD +V + +ER S + E +D +E+ + A+ + +
Sbjct: 137 SNNISKKQNSSRNDDTKV-KKDTTIERPES-LVVEIVDLPSEVTKDTAEESVWKDIGLDQ 194
Query: 303 SSQLSMNILE--AQTAVQLLEQEEGIINLQIENAIKEFVE---DRTRIVEETALNAALAI 467
+ LS+ + +T EQE +L+ E+++ E E ++I +E +
Sbjct: 195 ETGLSVTAIPIITETLDHAHEQEIKDQSLRFESSLNEANELHGKLSKIQQEQEHLFEQRL 254
Query: 468 REEVS 482
RE+VS
Sbjct: 255 REKVS 259
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 27.9 bits (59), Expect = 0.97
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +1
Query: 1 QWMFMGTVVKRIQHQISLLLVRSISTNNCKS 93
+W+F T+V + HQ++L ++ + + CK+
Sbjct: 2113 RWVFEETLVDNLYHQLTLYQLQDLICSKCKT 2143
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.9 bits (59), Expect = 0.97
Identities = 23/116 (19%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Frame = +3
Query: 114 LYVSKKFDLKQNESKNDDNEVLSQAKNMERRLSEA-LSEYIDSKAELCGEQAKL------ 272
L + +K LK + D+ + ER + E L+E + + EQ +L
Sbjct: 600 LSMKQKMQLKSLREEIDNTKEALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAEKYHE 659
Query: 273 ELVANYNNPHSSQLSMNILEAQTAVQLLEQEEGIINLQIENAIKEFVEDRTRIVEE 440
EL+ N + ++ ++ ++ + +E+E ++ E+ IK+F+E+ +++ ++
Sbjct: 660 ELLDNQQKLYDLRIELDYTKSNC--KQMEEEMQVLREGHESEIKDFIEEHSKLTKQ 713
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 261 QAKLELVANYNNPHSSQLSMNILEAQTAVQLLEQEEGI 374
+ +L+L YNNPH Q + N + AV+ + ++EG+
Sbjct: 135 KTRLQLQGRYNNPH-FQSNYNYPSFRGAVKQIAKQEGM 171
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/54 (22%), Positives = 29/54 (53%)
Frame = +3
Query: 120 VSKKFDLKQNESKNDDNEVLSQAKNMERRLSEALSEYIDSKAELCGEQAKLELV 281
++ +FD QNE + + V ++ +M+ ++E E ++ K E +++L+
Sbjct: 122 MNSRFDAMQNEMNSRFDAVQNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLL 175
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/54 (22%), Positives = 29/54 (53%)
Frame = +3
Query: 120 VSKKFDLKQNESKNDDNEVLSQAKNMERRLSEALSEYIDSKAELCGEQAKLELV 281
++ +FD QNE + + V ++ +M+ ++E E ++ K E +++L+
Sbjct: 122 MNSRFDAMQNEMNSRFDTVQNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLL 175
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = -2
Query: 520 ACCVVSSKYARSLLTSSLIANAALSAVSSTIRVRSSTNSLIAFSIWRFMIPSSCSRSWTA 341
A S+ + SL++S+ + +++ SAVSST + S +S I+ S+ S S ++
Sbjct: 118 ASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSI-PSISSTISSSVSTSSFTSLSSSGFST 176
Query: 340 V*ASS 326
V +S+
Sbjct: 177 VLSST 181
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.8 bits (54), Expect = 3.9
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +3
Query: 111 DLYVSKKF---DLKQNESKNDDNEVLSQAKNMERRLSEALSEYIDSKAELCGEQAKLELV 281
DL+ KF L + K NE SQ+ +E LS SEY + + + +L+ +
Sbjct: 943 DLHEQLKFVKDKLNKMSFKKKKNEQRSQSFQVE--LSNLTSEYDTTTESIATLKTELQSL 1000
Query: 282 ANYNNPHSSQL 314
Y + H S+L
Sbjct: 1001 NKYVDEHKSRL 1011
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = -2
Query: 496 YARSLLTSSLIANAALSAVSSTIRVRSSTNSLIAFSIW 383
YAR L A L ++ T+ ++ S L S W
Sbjct: 43 YARELAAIKEDTEAVLKRINDTVGIKESDTGLAPISFW 80
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -2
Query: 511 VVSSKYARSLLTSSLIANAALSAVSSTIRVRSSTNSLIAFSIWRFMIPSSCS 356
V SS + ++++ L + A + +S I SST + S W ++ S +
Sbjct: 348 VASSNFQVPIISNPLFKSPAPYSPTSVISNHSSTGKSLVISEWAYLASGSAN 399
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 159 NDDNEVLSQAKNMERRLSEALSEYIDS 239
N+D VLS + ERR EAL + ++S
Sbjct: 380 NEDRNVLSNMLDNERREKEALLQELES 406
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 144 QNESKNDDNEVLSQAKNMERRLSEALSEYIDSKAELCGEQAKLELVANYNNPHSSQLS 317
+ SKN+ +E + +ER AL K L QAK+E N N S+Q+S
Sbjct: 463 RRNSKNETDEE-KRKSFLERNRQAALKCRQRKKQWLSNLQAKVEFYGNENEILSAQVS 519
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 153 SKNDDNEVLSQAKNMERRLSEALS 224
SKNDD+E S++ M + L E L+
Sbjct: 151 SKNDDSETFSRSVLMNQELKEFLN 174
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +3
Query: 351 LLEQEEGIINLQIENAIKEFVEDRTRIVEETALNAALAIREEVSNDLAYLLDTTQH 518
L+EQ + L IE I+ FVED +++ A + N+ L + H
Sbjct: 271 LIEQLASLAKLNIETQIQYFVEDAEAYIKDDKFCTKHADLPNLVNNFEKYLSFSPH 326
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 87 QELYLSHFD-LYVSKKFDLKQNESKNDDNEVLSQAKN-MERRLSEALSEYIDSKAELCGE 260
Q L +S + L +++ +++ S N + E+L + KN +E +L EY D A L E
Sbjct: 239 QRLQISELEKLKAAQEERIEKLSSNNRNVEILKEEKNDLESKLYR-FEEYRDKVATLELE 297
Query: 261 QAKLELVAN 287
K++ N
Sbjct: 298 NEKIQTELN 306
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 64 RSISTNNCKSFTYLTLICMSVRNSILNRMKAKM 162
RSI ++ S YL + C + +LNRM + +
Sbjct: 346 RSIKSHLVLSALYLYIGCFHMHTQVLNRMSSAL 378
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 12 YGNCGEKDTAPNFFTFGPFDQYKQLQELYLSHF 110
YGN +T + FTF P Y+Q + Y +F
Sbjct: 89 YGNNAVTNTKYDLFTFLPKCLYEQFRYFYNMYF 121
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 200 LHVLSLTKYFVIIIFAFILFKIEFLTDIQIK 108
L V + TK+FV ++ F+ + + DIQ+K
Sbjct: 1238 LFVKATTKHFVFLLTDFMSAQTVYQIDIQVK 1268
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 78 KQLQELYLSHFDLYVSKKFDLKQNESKNDD-NEVLSQAKNMERRLSEALSEYIDSK 242
K+L +DL S + + +D N++ QAK +R+LSE DSK
Sbjct: 905 KELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQAKITQRKLSEVQIALADSK 960
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/89 (22%), Positives = 39/89 (43%)
Frame = +3
Query: 204 RLSEALSEYIDSKAELCGEQAKLELVANYNNPHSSQLSMNILEAQTAVQLLEQEEGIINL 383
++ E+++ Y DS L ++ + NYN+ S+ I +A V+ E+EE + +
Sbjct: 124 KIDESVASY-DSSTHL-RRSSRSKKPVNYNSSSESESEEQISKATKKVKQKEEEEYVEEV 181
Query: 384 QIENAIKEFVEDRTRIVEETALNAALAIR 470
++ E D V L ++ R
Sbjct: 182 DEKSLKNESSSDEFEPVVPEQLETPISKR 210
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 112 ICMSVRNSILNRMKAKMMITKYLVKLRT 195
IC +V + +R +A+ M +K+L+ L T
Sbjct: 450 ICRTVTQYVQSRGRARAMASKFLIFLNT 477
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 126 KKFDLKQNESKNDDNEVLSQAKNMERRLSEALS-EYIDSKAE 248
KKF L +NES E+L+ R+++EA S E ID++ E
Sbjct: 607 KKFQLSKNESLQGVQEMLN-----SRKMTEAGSIELIDTQGE 643
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 118 MSVRNSILNR-MKAKMMITKYLVKLRTWRGDFRKL 219
+SVR + L ++ K+ + Y+ KLR WR F +
Sbjct: 3200 VSVREAFLRDFVETKLDLLTYVDKLRMWRKKFENI 3234
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/51 (25%), Positives = 20/51 (39%)
Frame = +3
Query: 72 QYKQLQELYLSHFDLYVSKKFDLKQNESKNDDNEVLSQAKNMERRLSEALS 224
Q Q+ L + D + + D Q DD E+L + + R LS
Sbjct: 635 QPSQVDSLVPTQLDSTIPTQIDSVQRNKDQDDEEILEERRESRRDSKTFLS 685
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,870
Number of Sequences: 5004
Number of extensions: 32514
Number of successful extensions: 166
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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