Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323E02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    24   0.82 
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   1.9  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   2.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.7  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 69  DQYKQLQELYLSHFDLYVSKKFDLKQNESKNDDNEVLSQAKNMERRLSEAL 221
           DQ++   ++    +D Y S ++D    E+KN  N++L+   +     SEAL
Sbjct: 116 DQHRLYAQIKTGSYD-YPSPEWDTVTPEAKNLINQMLTVNPSKRITASEAL 165


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +3

Query: 165 DNEVLSQAKNMERRLSEALSEYIDSKAELCGEQAKLELVANYNNPHSSQLSMNILEAQTA 344
           +N  L++ +  +      L+E    K     ++AK++  +   NP + QL    L   + 
Sbjct: 41  ENRYLTERRRQQLSRDLGLNE-AQIKIWFQNKRAKIKKASGQKNPLALQLMAQGLYNHST 99

Query: 345 VQLLEQEE 368
           V L ++EE
Sbjct: 100 VPLTKEEE 107


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 135 DLKQNESKNDDNEVLSQAKNMERRL 209
           D K  + +N+DNE+  +++  E RL
Sbjct: 12  DEKFKQLRNEDNEIDLRSRTKEERL 36


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 156  KNDDNEVLSQAKNMERRLSEALSEYIDSKAELCGEQAKLELVANY 290
            K ++NE++ +   M  R     S+  D    L GE+  L+   +Y
Sbjct: 1546 KVEENEIIFEIYKMGDRFIGLTSDKFDVSLALDGERVMLKASEDY 1590


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +1

Query: 43  QISLLLVRSISTNNCKSFTYLTLICMSVRNSILNRMKAKMMITKY 177
           +++L   + I  N   +F Y+     +  NSI+ R   K  +  Y
Sbjct: 602 KLALFATKDIKQNEEITFDYMCQSSKNSENSIMQRASMKENLNVY 646


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +3

Query: 246 ELCGEQAKLELVANYNNPHSSQLSMNILEAQTAVQLLEQEEGIINL 383
           ++C    KL  +     PH      NIL     V +L  ++G++ +
Sbjct: 240 QVCSGNCKLNDILLTVRPHLELTFENILSHINTVYVLRTKKGVMRV 285


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +3

Query: 246 ELCGEQAKLELVANYNNPHSSQLSMNILEAQTAVQLLEQEEGIINL 383
           ++C    KL  +     PH      NIL     V +L  ++G++ +
Sbjct: 240 QVCSGNCKLNDILLTVRPHLELTFENILSHINTVYVLRTKKGVMRV 285


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 51  RNLVLYPFHHSSHKH 7
           R+L +Y  HH  H H
Sbjct: 65  RDLPIYQSHHHLHHH 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,499
Number of Sequences: 438
Number of extensions: 2216
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)