Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323E01f
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   8.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   8.5  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 23  MFVERSNGGASALHTAERW*YYTHSSFGNWTRN 121
           +F+E +   A  +  A  W YY +    N T N
Sbjct: 195 LFMEETLKAAKRMRPAANWGYYAYPYCYNLTPN 227


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 259  AMASAIP*PTCSSS 218
            AMASA P P C  S
Sbjct: 1047 AMASAAPMPACFDS 1060


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -2

Query: 264 HWQWLQLYP 238
           HW W  +YP
Sbjct: 209 HWHWHLVYP 217


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = -2

Query: 213 IRQPCRYVCIQLRLPNI 163
           +R+PC Y+ + L + ++
Sbjct: 72  LRRPCNYLLVSLAVSDL 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,292
Number of Sequences: 438
Number of extensions: 1949
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)