Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323D12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    42   4e-05
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    29   0.32 
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           27   1.3  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   3.0  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   9.0  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 14/36 (38%), Positives = 28/36 (77%)
 Frame = +3

Query: 414 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRG 521
           ++P+ NF+G L+GP+G+T+K ++  +  K+A+ G+G
Sbjct: 196 DYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKG 231


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +3

Query: 186 GEEGIKINEKAGEYMRELLSEKIK----LNNSKFPLSMKLIDQEVTKVQASGRITKDSKY 353
           G+  +  N K G    ELL+EKIK    +N+  +P+  K +  E+ +     R+ + +K 
Sbjct: 74  GQLAVSKNAKLGLQQYELLAEKIKIYGQINDDNYPIQKKHLTTEMLRQIPHLRL-RTAKQ 132

Query: 354 VDVFR 368
            ++FR
Sbjct: 133 GEIFR 137


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 316 YRLVVVSPRTQNMWMCSVTNQPKSQLKFLCQLR-NILNSTLWENY*VQKETL 468
           Y   VV+  T    MC  T++ K Q  FLC +R   L  T++  +   KE +
Sbjct: 161 YAKSVVNIETNESHMCIPTDKRKDQTLFLCTIRKEALEKTIFPLHNWTKENV 212


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 426 FNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRG 521
           F+    ++GP+G  +K +Q++T  ++ + G+G
Sbjct: 303 FHLRQAIVGPQGAYVKHIQQETRTRVQIKGQG 334


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +3

Query: 102  DKYDKNGYNSGDFKRNTTQGKPEELDQ--NGEEGIKINEKAGEYMRELLSEKIKLNNSKF 275
            DK   +  N      +  Q   E LD+  NG    K NE       ELL ++I++ N+K 
Sbjct: 844  DKLTADHTNYETVSADINQNLKETLDKLLNGSSDFKNNEI------ELLHDQIRITNAKL 897

Query: 276  PLSMKLID 299
                KLI+
Sbjct: 898  EKREKLIN 905


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,145
Number of Sequences: 5004
Number of extensions: 36175
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)