Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323D12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 64 6e-11
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 63 1e-10
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 63 1e-10
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 55 4e-08
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 55 4e-08
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 51 6e-07
Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical p... 49 2e-06
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 48 4e-06
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 48 4e-06
AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical ... 46 1e-05
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 46 2e-05
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 46 2e-05
U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical p... 40 0.001
Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 30 0.87
Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 30 0.87
Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 30 0.87
U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 30 1.2
AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 30 1.2
AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 30 1.2
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 29 2.0
U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 27 6.2
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 27 6.2
Z77132-5|CAB00863.2| 1423|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical pr... 27 8.1
U58746-11|AAB00630.1| 314|Caenorhabditis elegans Hypothetical p... 27 8.1
L13200-6|AAZ32790.1| 189|Caenorhabditis elegans Hypothetical pr... 27 8.1
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 64.1 bits (149), Expect = 6e-11
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Frame = +3
Query: 120 GYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKL 293
G +SG + T + NG + + + EY+ +LL +K +L + F +L
Sbjct: 37 GPSSGPPQVTITPSGVQSGSANGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERL 96
Query: 294 IDQEVTKVQA---SGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGN 464
D+E+ KV+ +K+S + EHP +NFVG++LGP+G
Sbjct: 97 ADEEINKVRVVLFQCEFSKESAPLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGM 156
Query: 465 TMKQLQEDTLCKMAVLGRG 521
T KQL+++T CK+ V GRG
Sbjct: 157 TAKQLEQETGCKIMVRGRG 175
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 62.9 bits (146), Expect = 1e-10
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Frame = +3
Query: 183 NGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA---SGRITKDS 347
NG + + + EY+ +LL +K +L + F +L D+E+ KV+ +K+S
Sbjct: 16 NGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCEFSKES 75
Query: 348 KYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRG 521
+ EHP +NFVG++LGP+G T KQL+++T CK+ V GRG
Sbjct: 76 APLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRG 133
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 62.9 bits (146), Expect = 1e-10
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Frame = +3
Query: 183 NGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA---SGRITKDS 347
NG + + + EY+ +LL +K +L + F +L D+E+ KV+ +K+S
Sbjct: 16 NGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCEFSKES 75
Query: 348 KYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRG 521
+ EHP +NFVG++LGP+G T KQL+++T CK+ V GRG
Sbjct: 76 APLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRG 133
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 54.8 bits (126), Expect = 4e-08
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Frame = +3
Query: 210 EKAGEYMRELLSEK--IKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKY-VDVFRDXXX 380
E EY+ +L+ EK + L F +L+D E+ +V+ + T+ + +
Sbjct: 144 EATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVELPEPAGDMI 203
Query: 381 XXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRG 521
E+P +NFVG++LGP+G T KQL++DT CK+ V G+G
Sbjct: 204 SITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKG 250
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 54.8 bits (126), Expect = 4e-08
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Frame = +3
Query: 210 EKAGEYMRELLSEK--IKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKY-VDVFRDXXX 380
E EY+ +L+ EK + L F +L+D E+ +V+ + T+ + +
Sbjct: 144 EATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVELPEPAGDMI 203
Query: 381 XXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRG 521
E+P +NFVG++LGP+G T KQL++DT CK+ V G+G
Sbjct: 204 SITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKG 250
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 50.8 bits (116), Expect = 6e-07
Identities = 19/35 (54%), Positives = 31/35 (88%)
Frame = +3
Query: 414 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGR 518
++PK+NFVG++LGP+G T+KQL+++T C++ V GR
Sbjct: 81 KYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGR 115
>Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical
protein Y57G11C.36 protein.
Length = 380
Score = 48.8 bits (111), Expect = 2e-06
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Frame = +3
Query: 87 LIKMADKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKL-- 260
L+++A+K+ + + ++ + + + +E K Y+ L EK +L
Sbjct: 14 LLRLAEKHQHSSLLTPPPSDDSQKSLKSTSNHSDQEMSKNLHDVEAYIDALKGEKHQLAQ 73
Query: 261 -NNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNFV 437
++ F LID+E+ KV + S+ + P +NFV
Sbjct: 74 YSSGGFNHVFNLIDKEIQKVGGNDAHDGGSQ----MSGDGSMLTETIMVPVEKFPDYNFV 129
Query: 438 GKLLGPKGNTMKQLQEDTLCKMAVLGR 518
G+LLGP+G T KQL+ T C++ +LGR
Sbjct: 130 GRLLGPRGTTAKQLEVTTGCRITILGR 156
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 48.0 bits (109), Expect = 4e-06
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +3
Query: 417 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRG 521
HP FNF+GK+LGPKG T++ L + C + +LGRG
Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRG 174
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 48.0 bits (109), Expect = 4e-06
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +3
Query: 417 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRG 521
HP FNF+GK+LGPKG T++ L + C + +LGRG
Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRG 174
>AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical
protein K07H8.9 protein.
Length = 254
Score = 46.4 bits (105), Expect = 1e-05
Identities = 15/33 (45%), Positives = 27/33 (81%)
Frame = +3
Query: 417 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLG 515
+P +NF+G+++GP+G T KQL++DT C++ + G
Sbjct: 132 YPTYNFIGRIIGPRGTTAKQLEKDTGCRIMIRG 164
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/89 (29%), Positives = 42/89 (47%)
Frame = +3
Query: 255 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 434
+LN + +L K+QA +I + K +R + P NF
Sbjct: 260 RLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYRAPNIRLHDKVWIPQEQFPDLNF 319
Query: 435 VGKLLGPKGNTMKQLQEDTLCKMAVLGRG 521
VG L+GP+GNT+K L+ +T K+ + G+G
Sbjct: 320 VGLLIGPRGNTLKSLEAETGAKIIIRGKG 348
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/89 (29%), Positives = 42/89 (47%)
Frame = +3
Query: 255 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 434
+LN + +L K+QA +I + K +R + P NF
Sbjct: 260 RLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYRAPNIRLHDKVWIPQEQFPDLNF 319
Query: 435 VGKLLGPKGNTMKQLQEDTLCKMAVLGRG 521
VG L+GP+GNT+K L+ +T K+ + G+G
Sbjct: 320 VGLLIGPRGNTLKSLEAETGAKIIIRGKG 348
>U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical
protein B0280.17 protein.
Length = 235
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/31 (48%), Positives = 25/31 (80%)
Frame = +3
Query: 429 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRG 521
N VG+L+GP+G T++QL++D CK+ + G+G
Sbjct: 129 NPVGRLIGPRGMTIRQLEKDLGCKLFIRGKG 159
>Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical
protein C12D8.1c protein.
Length = 548
Score = 30.3 bits (65), Expect = 0.87
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 429 NFVGKLLGPKGNTMKQLQEDTLCKMAVL 512
N G ++G G+T++QLQE + CKM ++
Sbjct: 101 NRCGLIIGKSGDTIRQLQEKSGCKMILV 128
>Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical
protein C12D8.1b protein.
Length = 611
Score = 30.3 bits (65), Expect = 0.87
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 429 NFVGKLLGPKGNTMKQLQEDTLCKMAVL 512
N G ++G G+T++QLQE + CKM ++
Sbjct: 164 NRCGLIIGKSGDTIRQLQEKSGCKMILV 191
>Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical
protein C12D8.1a protein.
Length = 589
Score = 30.3 bits (65), Expect = 0.87
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 429 NFVGKLLGPKGNTMKQLQEDTLCKMAVL 512
N G ++G G+T++QLQE + CKM ++
Sbjct: 142 NRCGLIIGKSGDTIRQLQEKSGCKMILV 169
>U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein.
Length = 415
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 435 VGKLLGPKGNTMKQLQEDT 491
VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166
>AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess
protein 3, isoform a protein.
Length = 415
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 435 VGKLLGPKGNTMKQLQEDT 491
VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166
>AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess
protein 3, isoform b protein.
Length = 443
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 435 VGKLLGPKGNTMKQLQEDT 491
VG ++GPKG T+K++Q+DT
Sbjct: 176 VGLVVGPKGATIKRIQQDT 194
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 150 TTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQAS 326
TTQ P+E D+ + K+ EKA E+ E KL L +L + + T + S
Sbjct: 4 TTQQTPKEADKKKADDKKVPEKAEPKKEEMSEEDQKLEEDLNLLVQRLSEPDTTLYKPS 62
>U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical
protein C23H3.3 protein.
Length = 378
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 432 FVGKLLGPKGNTMKQLQEDTLCKM 503
F+GKL+G T+ L+ +T C++
Sbjct: 111 FIGKLIGTNRRTLNSLENETQCRV 134
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 114 KNGYNSGDFKRNTTQGKPEELDQNGE-EGIKINEKAG 221
K+G SGD K N G + D+NG+ G N+K+G
Sbjct: 683 KSGDGSGDGKNNGNGGTGDGKDKNGKGSGSGDNDKSG 719
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 114 KNGYNSGDFKRNTTQGKPEELDQNGE-EGIKINEKAG 221
K+G SGD K N G + D+NG+ G N+K+G
Sbjct: 683 KSGDGSGDGKNNGNGGTGDGKDKNGKGSGSGDNDKSG 719
>Z77132-5|CAB00863.2| 1423|Caenorhabditis elegans Hypothetical
protein F54D1.6 protein.
Length = 1423
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 108 YDKNGYNSGDFKRNTTQGKPEELDQNG 188
YD+ G+++ DF++N+ G+ + L G
Sbjct: 279 YDRLGFDAADFRQNSRSGRCQALFNGG 305
>Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical
protein F54D1.1 protein.
Length = 278
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +3
Query: 423 KFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRG 521
K N++G++LGP G + + ++ + + G G
Sbjct: 151 KCNYIGRILGPSGMSARMIENQYDVTLLIRGAG 183
>U58746-11|AAB00630.1| 314|Caenorhabditis elegans Hypothetical
protein R05G6.1 protein.
Length = 314
Score = 27.1 bits (57), Expect = 8.1
Identities = 24/74 (32%), Positives = 34/74 (45%)
Frame = +3
Query: 90 IKMADKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNS 269
+KM D G RN+ Q P ELD +EG +I + A Y E++ ++ S
Sbjct: 116 VKMNDVAQLQGAIEHYVLRNSAQFDPVELDIINKEGYRIMQ-ASVYPDEIILQE----GS 170
Query: 270 KFPLSMKLIDQEVT 311
K + LID E T
Sbjct: 171 KKICEITLIDTEDT 184
>L13200-6|AAZ32790.1| 189|Caenorhabditis elegans Hypothetical
protein ZK1236.9 protein.
Length = 189
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 171 ELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSK--FPLSMKLIDQEVTKVQASGRITKD 344
E+D +GEE + KA E +RE+ ++ K K F KLI +E + S + K
Sbjct: 70 EVDLSGEELMPFLYKAAERLREMKDKQTKAEGIKLRFGSLAKLISEE----KLSDELIKS 125
Query: 345 SKYV 356
YV
Sbjct: 126 LNYV 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,933,570
Number of Sequences: 27780
Number of extensions: 201921
Number of successful extensions: 508
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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