Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323D12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    28   0.051
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.9  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   7.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.7  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 0.051
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 102 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKL 260
           +KY+KNG      K++  +  P ++    E     N++ GE M   ++E  +L
Sbjct: 164 EKYEKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSEL 216


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 87  LIKMADKYDKNGYNSGDF 140
           LIK++D  ++  YN+GD+
Sbjct: 229 LIKISDVLEETFYNNGDY 246


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = +1

Query: 322 LVVVSPRTQNMWMCSVTNQPKSQLKFLCQLRNILNSTLWEN 444
           L +  P+  N  M +     +  L+ LC +    + + WE+
Sbjct: 54  LTIPVPQAANKGMINQYGGEQPTLRLLCSIAGGTSESQWED 94


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 105 KYDKNGYNSGDFKRNTTQGK 164
           K++ N Y+SG     T +GK
Sbjct: 365 KFETNRYSSGRVLMRTVRGK 384


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 105 KYDKNGYNSGDFKRNTTQGK 164
           K++ N Y+SG     T +GK
Sbjct: 365 KFETNRYSSGRVLMRTVRGK 384


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 81  FDLIKMADKYDKNGYNSGDFKRNTTQG 161
           F++  ++ K  + GY +GD K N  +G
Sbjct: 310 FNVKNVSVKELRRGYVAGDSKNNPPKG 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,278
Number of Sequences: 438
Number of extensions: 2741
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)