Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323D10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    68   1e-12
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    28   0.97 
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   9.0  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   9.0  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 29/65 (44%), Positives = 41/65 (63%)
 Frame = -2

Query: 520 VSAPVPKKLLRMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKS 341
           V+APV K+ L++AG++DCYT +RGST TLGNF              LTP+LW + P  ++
Sbjct: 178 VAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQT 237

Query: 340 PYSEF 326
           P  E+
Sbjct: 238 PIEEY 242


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 501 RSFFGWLVYRTATPQLVVQL 442
           RS F WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 402 LPRHMPTSLLTCGGT 358
           LPR +PTSLLT  G+
Sbjct: 27  LPRSIPTSLLTAAGS 41


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 117 DEMILTSRCSYFRLREASFLSLFTQTERTLN 209
           DE++    C YF     +F   + +T R LN
Sbjct: 335 DEILWAKTCMYFTRGSLTFAEAYKRTGRILN 365


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +1

Query: 328 TLSMET*SAGCPSTSQE*GRHMSWQWQHMWL*QNFPRCQLNHELRCSSPVHQP 486
           TLS  + S G P   +  GRH S  +   W+ Q F   + +     S   H P
Sbjct: 461 TLSFTSGSEGIPKGVK--GRHFSLAYYFDWMAQEFNLSESDRFTMLSGIAHDP 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,179
Number of Sequences: 5004
Number of extensions: 36396
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)