Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323D10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                       71   4e-13
07_01_0756 + 5819367-5820038,5820847-5821005                           68   5e-12
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     46   2e-05
07_01_0008 - 56178-57095                                               31   0.56 

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 32/65 (49%), Positives = 42/65 (64%)
 Frame = -2

Query: 520 VSAPVPKKLLRMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKS 341
           V+A VPKK+L+ AG++D +TS+RGST TLGNF             +LTPD WRD    KS
Sbjct: 188 VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRDTKFVKS 247

Query: 340 PYSEF 326
           P+ E+
Sbjct: 248 PFQEY 252


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 30/65 (46%), Positives = 42/65 (64%)
 Frame = -2

Query: 520 VSAPVPKKLLRMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKS 341
           V+A VPKK+L+ AG++D +TS+RGST TLGNF             +LTPD WR+    K+
Sbjct: 191 VAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRETRFIKT 250

Query: 340 PYSEF 326
           P+ E+
Sbjct: 251 PFQEY 255


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = -2

Query: 520 VSAPVPKKLLRMAGVQDCYTSARGSTGTLGNF 425
           V+  VPKK+L+ AG++D +TS+RGST TL NF
Sbjct: 76  VATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107


>07_01_0008 - 56178-57095
          Length = 305

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 134 FTMLLLPPARSVFLILVYADRANPKRIHVGAGTELRPSA 250
           F +LLLPP  + F +  + +  +P R+ +     LRP+A
Sbjct: 7   FLLLLLPPPTAPFSLDFFPESPSPPRLALSGAASLRPTA 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,508,958
Number of Sequences: 37544
Number of extensions: 259647
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)