Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323D10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    82   3e-16
U41540-8|AAW30667.1|  571|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U41540-7|AAM54182.1|  930|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U41540-6|AAM54183.1|  934|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 38/62 (61%), Positives = 44/62 (70%)
 Frame = -2

Query: 520 VSAPVPKKLLRMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKS 341
           VSAPVPKKLL MAG++DCYT+A+GST TLGNF             YLTPDLW++  L KS
Sbjct: 201 VSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKEEALEKS 260

Query: 340 PY 335
           PY
Sbjct: 261 PY 262


>U41540-8|AAW30667.1|  571|Caenorhabditis elegans Hypothetical
           protein F35H12.2c protein.
          Length = 571

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 214 PRRCRYRAETLCRIRHEVFLRLINSFIQLLYNDCLRL*TLSMET*SAGCPSTSQE*GRHM 393
           PR+ R  A T C I   V  RL +S +++  N+  R+  L  E          +E GRH 
Sbjct: 285 PRKYRTEASTKCLIHKAVKFRLNHSKLEVYENEYKRIKELEREN-EDPVLRMEKEIGRHQ 343

Query: 394 S 396
           +
Sbjct: 344 A 344


>U41540-7|AAM54182.1|  930|Caenorhabditis elegans Hypothetical
           protein F35H12.2a protein.
          Length = 930

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 214 PRRCRYRAETLCRIRHEVFLRLINSFIQLLYNDCLRL*TLSMET*SAGCPSTSQE*GRHM 393
           PR+ R  A T C I   V  RL +S +++  N+  R+  L  E          +E GRH 
Sbjct: 644 PRKYRTEASTKCLIHKAVKFRLNHSKLEVYENEYKRIKELEREN-EDPVLRMEKEIGRHQ 702

Query: 394 S 396
           +
Sbjct: 703 A 703


>U41540-6|AAM54183.1|  934|Caenorhabditis elegans Hypothetical
           protein F35H12.2b protein.
          Length = 934

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 214 PRRCRYRAETLCRIRHEVFLRLINSFIQLLYNDCLRL*TLSMET*SAGCPSTSQE*GRHM 393
           PR+ R  A T C I   V  RL +S +++  N+  R+  L  E          +E GRH 
Sbjct: 648 PRKYRTEASTKCLIHKAVKFRLNHSKLEVYENEYKRIKELEREN-EDPVLRMEKEIGRHQ 706

Query: 394 S 396
           +
Sbjct: 707 A 707


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,072,436
Number of Sequences: 27780
Number of extensions: 210456
Number of successful extensions: 406
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)