Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323D08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0127 - 955244-956278,956397-956651                               29   3.0  
04_02_0021 - 8629891-8630319                                           28   5.2  
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773...    27   6.9  

>07_01_0127 - 955244-956278,956397-956651
          Length = 429

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 100 HMELKKKLNEIQFSITKFEKSKIKRLRFFWVN 5
           H +   K N++  S +K + +  KR+RFFWV+
Sbjct: 17  HEQDNSKDNKVSNSFSKSKFNPAKRVRFFWVS 48


>04_02_0021 - 8629891-8630319
          Length = 142

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 RCKCYFCLNTTSMNIANSTPTFFIYKFY 326
           R K YFC N  ++N  +   T F+ KF+
Sbjct: 89  RAKQYFCANRAAVNTWDKCSTTFLSKFF 116


>03_05_0422 -
           24076917-24077125,24077209-24077266,24077350-24077399,
           24077494-24077754,24077837-24078230,24081256-24081366,
           24082255-24082596
          Length = 474

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 154 RKNFFSWKRLIVYIKNS*HMELKKKLNEIQFSITKFEKSKI 32
           RK    WK + VYI     + LK K   +  +ITK +KS +
Sbjct: 368 RKGALHWKVVSVYINRMGLVMLKMKSRHVAGTITKKKKSVV 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,031,411
Number of Sequences: 37544
Number of extensions: 146444
Number of successful extensions: 210
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)