Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323D06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    28   0.97 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   1.7  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   1.7  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    27   2.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   3.0  
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    26   3.9  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   3.9  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            25   5.2  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    25   5.2  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   6.8  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.8  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    25   6.8  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   6.8  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   9.0  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   9.0  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   9.0  

>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 348 QNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTR 494
           Q+ ++S  H  L+IP+P P   SNN  N    ++ SS  S +++ +  R
Sbjct: 61  QDSSISFTHDPLHIPLPNP---SNNNDNIFHPQVHSSFHSRSASRQRRR 106


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 267 LKAEHLIIKGFPEKIVKLNELLETS-NFQNRNLSDVHQDLNIPIPTPPATS 416
           +K E  + +  P++  +  E ++TS +    N+S + +  ++P+PT  AT+
Sbjct: 524 IKEEEAVSENAPQQEERSFEQIKTSIHIAPENISAIEESKSVPLPTSFATT 574


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 405 PATSNNEPNAKRQRLDSSELS 467
           P  S+N PN KR+R  SSE S
Sbjct: 490 PTRSDNPPNEKRRRTSSSENS 510


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 372 HQDLNIPIPTPPATSNNEPNAKRQRL-DSSELSSNSTIEGTRVYV 503
           H D  + IP+P   ++ +   + QRL   S+++ +  +E  +VY+
Sbjct: 546 HPDDKLMIPSPKIVTHGDAMQEEQRLRQKSQITPDDEVELAKVYL 590


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 300 PEKIVKLNELLE-TSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSN 473
           P  +V+ N  ++ T+   + + +D+H +    +  PP++   E N    +L++ ++SS+
Sbjct: 390 PSFVVQNNSAVQPTTQKTSEDSTDLHTNEIPNVAQPPSSFEKENNKDTSKLENPDISSS 448


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 333 ETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAK--RQRLDSSELSSNST 479
           E  NF+   +S   Q  N+P+     T N E N    R+RL +  +SS+++
Sbjct: 120 ENDNFRRYGVSGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAS 170


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 237 QVQDYKDSLKLKAEHLI--IKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 410
           ++Q     LKL+ E L   IK   E+   L E LET     +NL +++ +    +     
Sbjct: 319 EIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQ 378

Query: 411 TSNNE 425
             NN+
Sbjct: 379 KLNNK 383


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 212 RHNWLVCISGPRLQRF 259
           +HN++VC SGP L  F
Sbjct: 19  KHNYIVCCSGPYLLGF 34


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +3

Query: 318 LNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGT 491
           +++L+   +   +N+ +   ++N+PIP P  +S    N  R+ L+  E   N    GT
Sbjct: 16  VDQLIAERSMLIKNMLEDVGEINVPIPLPNVSS----NVLRKVLEWCEHHKNDLYSGT 69


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 303 EKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSN 419
           E+++K  EL   ++    N S+++Q  N+P      TSN
Sbjct: 408 EELIKKEELEADTDLGLINTSEINQPANLPDEPTAETSN 446


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 88  KRGNNLLQVVIMGAVSFE-QNQHNLNTPWCSAVSS 189
           K   ++++  + G + ++ QN+  L+ PWC  VS+
Sbjct: 662 KHAVDMVEAFLGGDMEYDVQNETGLHRPWCLYVST 696


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 417 NNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGS 518
           NN PN  + RL +    S+S +  T+ +  P  S
Sbjct: 54  NNHPNGPQLRLQTHFFHSSSPMHATKGFRFPKSS 87


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 335 DIKLSKSE--FIGRTSGFKHSNTNTTCNVK 418
           D  LSK+E   I +T+  KH  TNTT +VK
Sbjct: 738 DSGLSKTERLTIQQTNEIKHVPTNTTSSVK 767


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 390 PIPTPPATSNNEPNAKRQRLDSS 458
           P PTPPA+S++ P    Q + ++
Sbjct: 256 PAPTPPASSSSSPLLSSQTVKTT 278


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 309 IVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSN 419
           I +LNE L+  N ++  + D+  D    +  PP+T N
Sbjct: 210 IHELNEHLKNVNSKHSEIDDLLPDKRSIVSLPPSTLN 246


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 333 ETSNFQNR-NLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDS 455
           ETS +++  N++DV+  L +  PT  + S NEP      LDS
Sbjct: 598 ETSFYRHMLNVADVNDSLIMIQPTLQSYSFNEPEGVPVLLDS 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,755
Number of Sequences: 5004
Number of extensions: 43511
Number of successful extensions: 153
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)