Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323D06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0510 + 4455805-4456637,4457837-4457912 30 0.98
09_04_0007 - 13641012-13641431,13642220-13642312,13642429-136425... 30 1.3
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 30 1.3
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 29 1.7
01_06_0356 + 28662956-28664043,28664255-28665139,28665227-286658... 29 2.3
09_04_0652 - 19227686-19227926,19229368-19232294 29 3.0
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 28 4.0
03_03_0188 + 15269347-15270213 28 5.2
02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116... 27 6.9
10_07_0134 + 13289641-13290216,13290435-13290914 27 9.1
02_05_0988 - 33340477-33340953 27 9.1
>08_01_0510 + 4455805-4456637,4457837-4457912
Length = 302
Score = 30.3 bits (65), Expect = 0.98
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 252 KDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPI 395
K S L+ E+ +KG ++I L + L N R L+DV +DL+ P+
Sbjct: 19 KLSKLLEDEYAKLKGVQQQIAFLRDELRAMNATLRVLADVEEDLDPPV 66
>09_04_0007 -
13641012-13641431,13642220-13642312,13642429-13642521,
13642607-13642671,13643495-13643565,13643644-13643682,
13644709-13645121
Length = 397
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 255 DSLKLK-AEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPN 431
++LK+K A+ L+ G P ++ NE+L S++ RNLS V + T A + +P
Sbjct: 288 EALKIKYADPLVYTG-PIRVRTGNEILRISSYLQRNLSRVTVPFLVLHGT--ADTITDPG 344
Query: 432 AKRQRLDSSELSSNSTIE 485
A QRL S S++ +I+
Sbjct: 345 AS-QRLYQSSASAHKSIK 361
>03_05_0967 + 29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +3
Query: 333 ETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNS 476
E +N QNR SDVH P + T +PN D + LSSNS
Sbjct: 1101 EENNMQNRGRSDVHPRDENPNNSERNTRQEKPNNTH---DGNRLSSNS 1145
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 390 PIPTPPATSNNEPNAKRQRLDSSE 461
P P PPATS P A + LD+ E
Sbjct: 81 PPPPPPATSRRPPRAPERELDTEE 104
>01_06_0356 +
28662956-28664043,28664255-28665139,28665227-28665840,
28665929-28666338
Length = 998
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +3
Query: 324 ELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELS 467
EL +N Q LSD DL+ PIP NN PN R +L S+ L+
Sbjct: 161 ELANLNNLQILRLSD--NDLSGPIPQ--GLFNNTPNLSRIQLGSNRLT 204
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 366 DVHQDLNIPIPT--PPATSNNEPNAKRQRLDSSELSSN 473
D DL++P+P+ PPA S + P AKR + + + N
Sbjct: 367 DQFLDLSLPVPSRRPPAKSVSSPPAKRNKQSLRDRNKN 404
>05_01_0035 -
232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 69 IMTDVAKKRE*SVTSRHNGSCKFRAKST*PQHAMVFCCIVQ 191
+ D+++ E S NG K+ A T P HA + C +V+
Sbjct: 555 LFIDISEHLELSSLPSSNGVLKYLAGKTLPSHAAILCGLVK 595
>03_03_0188 + 15269347-15270213
Length = 288
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 327 LLETSNFQNRNLSDVHQDLNIPIPTPPA-TSNNEPNAKRQR 446
LL TS+ + +S P P PPA TSNN+P KR R
Sbjct: 56 LLHTSSSSSATMSP--SQAPPPHPPPPAPTSNNKPPKKRPR 94
>02_05_0030 +
25209067-25209130,25209231-25209400,25210482-25211668,
25211695-25212011,25212669-25213374,25214248-25215448
Length = 1214
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 134 VSSKINITSTRHGVLL-YRPMNLIIRWRHNW-LVCISGPRLQRFFE 265
V KIN+TS+ +G+LL RPM+ + W + P +RF E
Sbjct: 183 VPRKINVTSSCNGLLLCRRPMDSSVASGARWCCYYVCNPATKRFVE 228
>10_07_0134 + 13289641-13290216,13290435-13290914
Length = 351
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 306 KIVKLNELLETSNFQNR--NLSDVHQDLNIPIPTPPATSNNEPNAKR 440
+++ LN ++ NR N S+++ D++ P P PP NE R
Sbjct: 217 ELINLNVKETEASCSNRSENSSEINLDISRPAPPPPPPPANESPVNR 263
>02_05_0988 - 33340477-33340953
Length = 158
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 440 TFSIWLIV*RCRWCWYWNV*ILMYV 366
T+S W RCR W W+V L+Y+
Sbjct: 78 TWSTWRTGGRCRMPWDWHVDQLVYI 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,164,742
Number of Sequences: 37544
Number of extensions: 253225
Number of successful extensions: 725
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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