Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323D05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 125 5e-30
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 40 3e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 39 5e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 34 0.011
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.015
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.026
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 32 0.045
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 32 0.045
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 32 0.060
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.060
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 31 0.079
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.18
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.24
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 28 0.97
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 1.3
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.2
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 26 3.0
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 3.0
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 3.0
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.9
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 25 5.2
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 9.0
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 25 9.0
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 9.0
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 25 9.0
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 125 bits (301), Expect = 5e-30
Identities = 56/95 (58%), Positives = 78/95 (82%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTR 182
GFGFV + + + A++A ELN KE +GK LYVGRAQKK ER++EL++++EQ+K E++ +
Sbjct: 302 GFGFVNYANHECAQKAVDELNDKEY-KGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNK 360
Query: 183 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 287
YQGVNL++KNL D +DDERL+ EF+ FGTITSAK+
Sbjct: 361 YQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKI 395
Score = 51.6 bits (118), Expect = 7e-08
Identities = 34/92 (36%), Positives = 47/92 (51%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTR 182
G+GFV F+ ++A A +NG L+ K +YVG + ERQ K E LK+
Sbjct: 209 GYGFVHFDSVESANAAIEHVNGM-LLNDKKVYVGHHVSRRERQS----KVEALKANF--- 260
Query: 183 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 278
N+Y+KNLD I ++ F FG ITS
Sbjct: 261 ---TNVYIKNLDTEITEQEFSDLFGQFGEITS 289
Score = 49.2 bits (112), Expect = 4e-07
Identities = 23/58 (39%), Positives = 36/58 (62%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 176
GFGFV + P+ A +A E+N + ++ GKPLYV AQ+K R+ +L+ + + RL
Sbjct: 405 GFGFVCYTTPEEANKAVTEMN-QRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRL 461
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 39.5 bits (88), Expect = 3e-04
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKSERLT 179
G+GFVAF +AA RA LNG +V K ++V A++K++R + L+ F + SE+
Sbjct: 426 GYGFVAFRQIEAAVRAKDTLNGM-MVGKKRIFVCFAERKSDRIRRLQAFFANKPTSEQTA 484
Query: 180 RYQGVNLYVK 209
+ L+VK
Sbjct: 485 QQDNKALFVK 494
Score = 34.3 bits (75), Expect = 0.011
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +3
Query: 195 NLYVKNLDDTI--DDERLRKEFAPFGTITSA 281
NLYVKNLDDT+ +L F+PFG+I S+
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSS 413
Score = 28.7 bits (61), Expect = 0.56
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 198 LYVKNLDDTIDDERLRKEFAPFGTITS 278
+YV N+D + DE + K F+ +G + S
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVES 45
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 38.7 bits (86), Expect = 5e-04
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 158
G+GFV+F P A +A LNG L K L+V A+K+ +R+K L F Q
Sbjct: 463 GYGFVSFSHPFEAVQAINTLNG-VLFGKKRLFVNYAEKREDRKKRLSAIFSQ 513
Score = 29.9 bits (64), Expect = 0.24
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +3
Query: 195 NLYVKNLDDTI--DDERLRKEFAPFGTITS 278
NL+VKNLDD I + ++L + F+ FG I S
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKS 449
Score = 29.5 bits (63), Expect = 0.32
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 162 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTIT 275
K++R T+ +++YV NL T L + F PFG +
Sbjct: 10 KNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFS 47
Score = 28.3 bits (60), Expect = 0.73
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = +3
Query: 6 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQL----KSER 173
F F+ FE+ +A+ A LNG +G L V + +L+ +Q+ +
Sbjct: 68 FAFITFENKCSADNAIASLNGSSF-QGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKA 126
Query: 174 LTRYQGVNLYVKNLDDTIDDERL 242
R+ + Y K T+ + R+
Sbjct: 127 KIRFSKIEKYTKETRPTVSEVRV 149
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 34.3 bits (75), Expect = 0.011
Identities = 29/93 (31%), Positives = 38/93 (40%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTR 182
GFGF F E AC LN +L GKP+ V RA + +
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLF-GKPIRVNRASQ----------------DRGVNT 95
Query: 183 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSA 281
G NL+V NLD +D+ L F+ G + A
Sbjct: 96 LIGANLFVGNLDPLVDERVLYDTFSALGQLVKA 128
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 33.9 bits (74), Expect = 0.015
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKP 92
GFG+V F D D+A++ C+E+NG + G+P
Sbjct: 408 GFGYVTFSDIDSAKK-CVEMNG-HFIAGRP 435
Score = 32.3 bits (70), Expect = 0.045
Identities = 21/95 (22%), Positives = 46/95 (48%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTR 182
G+G+V FE P+AA +A + NG + ++G+ + + + + + ++ ++L+
Sbjct: 305 GYGYVDFETPEAA-KAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSE 363
Query: 183 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 287
++V NL ++ L F G I S ++
Sbjct: 364 -PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRL 397
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Frame = +3
Query: 108 AQKKAERQKELKRKFEQLKSERLTRY--------QGVNLYVKNLDDTIDDERLRKEFAPF 263
++ ++ + E KRK E ER + + ++V L +DD+ L +EF +
Sbjct: 227 SESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEY 286
Query: 264 GTITSAKV 287
GTI A+V
Sbjct: 287 GTIVGARV 294
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.1 bits (72), Expect = 0.026
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 119
GF FV +D AAE A LNG E ++G+P+ V A K
Sbjct: 149 GFAFVWMKDRKAAEEAMNSLNGTE-IDGRPIAVDWAVSK 186
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 32.3 bits (70), Expect = 0.045
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 195 NLYVKNLDDTIDDERLRKEFAPFGTI 272
N+Y+ N DD++ ERL+++F FG I
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEI 440
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 32.3 bits (70), Expect = 0.045
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFE 155
GFGFV+F + + RA E+NGK+ V L V A + ++Q + K E
Sbjct: 259 GFGFVSFANAEDQSRAIEEMNGKQ-VGDLTLVVKSAVFREDKQNDENEKNE 308
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.9 bits (69), Expect = 0.060
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +3
Query: 39 AERACIELNGKELVEGKPLYV---GRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 209
+++ ++ KEL+E K A K Q++L + E L++++ + ++YV
Sbjct: 2 SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKES-IDAQSVYVG 60
Query: 210 NLDDTIDDERLRKEFAPFGTITSAKV 287
N+D ++ E L+ FA G++ +
Sbjct: 61 NVDYSVTPEELQSHFASCGSVNRVTI 86
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 31.9 bits (69), Expect = 0.060
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 110
GFGFV+F+D D +A E NGK + +P+ + RA
Sbjct: 71 GFGFVSFKDSDQFLKAWREKNGK-YIGSRPVKLSRA 105
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 31.5 bits (68), Expect = 0.079
Identities = 26/81 (32%), Positives = 39/81 (48%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTR 182
GFGFV ED A + GKE + G + V A+ + R++E R+ K R R
Sbjct: 38 GFGFVEVEDARDARDIVNDFQGKEFM-GSRIVVEPARGE-RRRRENFRESAASKYPR-PR 94
Query: 183 YQGVNLYVKNLDDTIDDERLR 245
G L V+NL + + + L+
Sbjct: 95 RTGFRLIVENLSEDVSWQDLK 115
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 30.3 bits (65), Expect = 0.18
Identities = 21/95 (22%), Positives = 46/95 (48%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTR 182
GFGFV F+D +A A +NG +++G L + + + + E+++ + ++
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNG-FVLDGHKLEIKLSHQGVDAAAEVRK-------QDSSK 717
Query: 183 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 287
+G + +KNL + ++ +G + S +V
Sbjct: 718 PKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRV 752
Score = 29.5 bits (63), Expect = 0.32
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKA 122
GF ++ F D D A RA +EL+ K +G+ L+V A+ ++
Sbjct: 365 GFAYIDFHDADDAVRAYLELDAKPF-QGRLLHVLPAKARS 403
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 153 EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 287
E++ +E + +YVKNL+ + E +K F P SA +
Sbjct: 606 EKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVI 650
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.9 bits (64), Expect = 0.24
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKEL-------VEGKPLY-VGRAQKKAERQKELKRKFEQ 158
GFG+V AE A + GK+L V KP + + + + + L + FE
Sbjct: 797 GFGYVVMTTNQDAENA-LSAAGKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFET 855
Query: 159 LKSERLT-------RYQGVNLYVKNLDDTIDDERLRKEFAPFGTI 272
+S +++ + + +L V N+D T+++ RLR F +G +
Sbjct: 856 TESNKMSTPKKSFEQIKSKSLGVTNVDGTVNEARLRSLFESYGKL 900
Score = 28.7 bits (61), Expect = 0.56
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 183 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 287
Y+G LYV N+D ++++ + F +G + S ++
Sbjct: 754 YEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRI 788
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 0.97
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +3
Query: 123 ERQKELKRKFEQL--KSERLTRYQGVNL--YVKNLDDTID 230
++++ELK KFE+L K+ER R QG L + DD ID
Sbjct: 70 KKEEELKSKFEKLRQKNERRRRTQGKTLAETLAEEDDQID 109
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELV-EGKPLYVGRAQKKAERQKELKRKFEQ 158
GFG++ + +P +A A ++NG +L + +G + E + ++F++
Sbjct: 381 GFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDE 433
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 54 IELNGKELVEG--KPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI 227
++L +LVE K L+V + K E ++ K+ E LKS R +N Y+ L + I
Sbjct: 338 VDLETPKLVEELTKQLHVAESTLK-ENSEKFKQNSESLKS----RVDNLNDYITKLQNEI 392
Query: 228 DDER 239
D+ R
Sbjct: 393 DECR 396
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 26.2 bits (55), Expect = 3.0
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYV---GRAQKKAERQKEL---KRKFEQLK 164
G F FE+ D A+ EL+GK++++ V + +K E +R+F++ +
Sbjct: 92 GLVFADFENVDGADLCVQELDGKQILKNHTFVVRKLNQLEKAFSTPDEFSFEEREFKERE 151
Query: 165 SER--LTRYQGVNLYVKNLDDTIDDERLRKEFAP 260
R LT Y G + ++ + + RK P
Sbjct: 152 HLRSWLTDYYGRDQFISYYGNRVSVNWNRKSDVP 185
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 147 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE--FAPFGTIT 275
KF Q+ T VN + NLD I+D + + + F P TIT
Sbjct: 418 KFAQVSDMCSTEIPWVNFFCDNLDICIEDVQFKSKAFFPPTVTIT 462
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 6 FGFVAFEDPDAAERACIELNGKELVEG 86
F FV +ED AE A E++G+ L G
Sbjct: 49 FAFVEYEDSRDAEDAYYEVHGRRLERG 75
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 352 VKF*FCNNLKHAIQKILNPKTHTFADVIVPN 260
VK F NN+K + ++ N + H+ D++ N
Sbjct: 401 VKVDFYNNIKSYLSEVKNTEIHSLEDIVEYN 431
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 399 LPYFYVGYIIFVIKIKLNFNFV 334
L FYVGYIIF + L F+
Sbjct: 133 LALFYVGYIIFEVPSNLMMAFI 154
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 481 SNACKPSIFIYLNRVY 434
+ AC P I+++ NRVY
Sbjct: 381 AGACTPIIYVHYNRVY 396
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +3
Query: 42 ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDD 221
E+A +G + G PL K ER K+ K+K + S V+ V + D
Sbjct: 107 EKAAATKDGFFVFSG-PLVAEGDTVKIERSKKTKKKKKTSLSNATHPAPAVSAVVASADA 165
Query: 222 TIDDER 239
+ DD R
Sbjct: 166 SFDDSR 171
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 3 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 110
GFG V FE+ + A + +LNG G+PL + A
Sbjct: 321 GFGVVQFENENDAASSIEKLNGYR-YGGRPLQLSYA 355
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 111 QKKAERQKELKRKFEQLKSERLTRYQGVNL 200
+K E+Q EL R+ L+ R + G+N+
Sbjct: 180 RKDREKQLELTRRLSHLQKRRELKAAGINI 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,374
Number of Sequences: 5004
Number of extensions: 34740
Number of successful extensions: 163
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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