Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323D05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.62 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   5.8  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   5.8  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   7.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.7  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   7.7  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 67  PFNSMQALSAASGSSKATKPKP 2
           P +S + LSAA+ SS +T P+P
Sbjct: 823 PASSPRYLSAAATSSTSTSPRP 844


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 172 RSDFSCSNLRFNSF*RSAFFCARPT*RGLPSTSSLP 65
           R+D S S+   +S   + F+  +PT    P  S LP
Sbjct: 368 RTDISSSSSSISSSEENDFWQPKPTLEDAPQNSLLP 403


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 451 YLNRVYN*NYKSELKKL 401
           Y N  YN NY +  KKL
Sbjct: 338 YNNNNYNNNYNNNCKKL 354


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 42  ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 158
           +R  I+   K LVE KP        K +  K+ + KFE+
Sbjct: 83  QREVIKKVIKFLVENKPELWDSLANKYDPDKKFRVKFEE 121


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 42  ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 158
           +R  I+   K LVE KP        K +  K+ + KFE+
Sbjct: 83  QREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEE 121


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 445 NRVYN*NYKSELKKLLTLFLCRI 377
           N  YN NY +  KKL   ++  I
Sbjct: 102 NNNYNNNYNNNYKKLYKNYIINI 124


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 445 NRVYN*NYKSELKKLLTLFLCRI 377
           N  YN NY +  KKL   ++  I
Sbjct: 102 NNNYNNNYNNNYKKLYKNYIINI 124


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 42  ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 158
           +R  I+   K LVE KP        K +  K+ + KFE+
Sbjct: 83  QREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEE 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,172
Number of Sequences: 438
Number of extensions: 2300
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)