Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323D04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.14 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.18 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    29   0.56 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.7  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    27   1.7  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   2.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.2  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    26   3.9  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   5.2  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   5.2  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    25   6.8  
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    25   9.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 157 PFLPMGAPVSAALPTAGLRLPCLPFTLPAS 68
           P LPMGAP +  LP +    P LP  +PA+
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPLPAGMPAA 466



 Score = 28.7 bits (61), Expect = 0.56
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +1

Query: 100 SAGLRSAARPRPGLPSARKAVTPMSPL*NCPRTATPPSIPSTKTVTDTSWRNQTRTRPSD 279
           S  + +   P P +P       P  PL N  RT+TPP +P+  ++  ++  +   + P  
Sbjct: 382 SRAVSNPPAPPPAIPGRSAPALP--PLGNASRTSTPP-VPTPPSLPPSAPPSLPPSAPPS 438

Query: 280 SSMTSSRWPPI 312
             M +   PP+
Sbjct: 439 LPMGAPAAPPL 449



 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 172 TSALRPFLPMGAPVSAALPTAGLRLPCLPFTLPASGTAIIS 50
           ++ + P LP G P +  LP A    P  P   PA+  A I+
Sbjct: 452 SAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIA 492


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = +1

Query: 112  RSAARPRPGLPSARKAVTPMSPL*NCPRTAT----PPSIPSTKTVTDTSWRNQTRTRPSD 279
            R A+ PRP  P +     P+S + + P +      PPS P +K V+ +      R  P  
Sbjct: 956  RKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVP 1015

Query: 280  SSMTSSRWPPIAISTCGA 333
                SS+ PP+ + +  A
Sbjct: 1016 K--LSSKAPPVPLPSADA 1031


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 100 SAGLRSAARPRPGLPSARKAVTPMSPL*NCPRTATPPSIPS 222
           S+G R    P+   P++R+ V P +       T+ PPS+PS
Sbjct: 544 SSGTRRLGLPQRATPASRERVLPYTRSQAFHSTSLPPSLPS 584


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +1

Query: 133 PGLPSARKAVTPMSPL*NCPRTATPPSIPSTKTVTDTSWRNQTRTRPSDSSMTSSRWPPI 312
           P   ++   VTP  P  +   T+TPP  P++ + T TS  +      S S  TS+  PP 
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPP-PASTSSTGTS--SSPLPSTSTSCTTSTSIPPT 348

Query: 313 AIST 324
             ST
Sbjct: 349 GNST 352



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +1

Query: 133 PGLPSARKAVTPMSPL*NCPRTATPPSIPSTKTVTDTSWRNQTRTRPSDSSMTSSRWPPI 312
           P   ++   VTP  P  +   T+TPP  P++ + T TS  +      S S  TS+  PP 
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPP-PASTSSTGTS--SSPLLSTSTSCTTSTSIPPT 402

Query: 313 AIST 324
             ST
Sbjct: 403 GNST 406


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 305 GHLDDVIELSEGRVRVWF---RQDVSVTVFVEGMLGGVAVRG 189
           GHL   + L  GRV+ W    R D S T+ ++ +L     RG
Sbjct: 67  GHLKKPLRLGLGRVQEWIDRGRLDASKTITMKDLLDSRCCRG 108


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 381 WSGKPIPGWLYR 416
           W GKPIP WL++
Sbjct: 378 WDGKPIPFWLWK 389


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 169  SALRPFLPMGAPVSAALP-TAGLRLPCLPFTLPASGTAIISS 47
            SA RP +P   PVS ALP ++ +  P +  +   S TA  +S
Sbjct: 1065 SATRPQIPQPPPVSTALPSSSAVSRPPIATSAGRSSTAASTS 1106


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 153 KGRNADVTALKLPSHGYPTEHPFNKDGYRYILAE 254
           KGRN +   +   + G P +HP  +  Y  I A+
Sbjct: 211 KGRNEECMKILTRNAGLPADHPIMQKEYNAIQAD 244


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 109  GLRLPCLPFTLPASGTAIISSRCSNFQRII 20
            GL++ CLPF   ++  A+I+S  +  ++ +
Sbjct: 970  GLKIYCLPFFSSSNNLAVITSSLAKIEQTV 999


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +3

Query: 390 KPIPG-WLYRPLCPGGVLL 443
           K +PG W++R L PGG+ L
Sbjct: 368 KGLPGSWIFRKLTPGGIPL 386


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 408 LYRPLCPGGVLLALHDRAPQLRVAEDRLAV 497
           LY+  CP G+LL + +  P++ +    LA+
Sbjct: 111 LYKVSCPVGLLLVIFEARPEVIINITSLAI 140


>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 141 PIGKKGRNADVTALKLPSHGYPTEHPFN 224
           P  K  RN  + A      G+PT +PFN
Sbjct: 13  PAMKGARNISILAGGGTMRGFPTRNPFN 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,818,015
Number of Sequences: 5004
Number of extensions: 34809
Number of successful extensions: 113
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)