Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323C11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 163 1e-41
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 27 1.3
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 1.7
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 2.2
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.2
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 3.0
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 5.2
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 6.8
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 25 9.0
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces... 25 9.0
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 163 bits (396), Expect = 1e-41
Identities = 81/151 (53%), Positives = 111/151 (73%), Gaps = 2/151 (1%)
Frame = +2
Query: 71 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 244
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 245 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 424
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 425 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKV 517
++AILED+VFP EI+GKR R DG + IKV
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKV 154
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 193 FCNVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHRSNVIN 44
FC+V +P++ GF RL D+ + GI ++ + TH + +IN
Sbjct: 416 FCDVGVPEIS-----GFAHISRLSDKKVAGISPNSGPYKVDSTHEARIIN 460
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -3
Query: 363 LGLGRILRSPTKTTCLPLNFFSSSRTS 283
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 336 ETVRSCLSPATKPVLLTNKRGHAQ 407
E+ + ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 233 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 325
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 391 KEATLKDIDLCVRCYPRGLGLPC 459
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 46 LLHWNDEYEDHQSERC*GGFLRDLDLAGA 132
+ +WND Y + ++ER FL+DL++ A
Sbjct: 998 ICNWNDSYGEFETER--RYFLQDLEIEDA 1024
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 353 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 478
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 59 TMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELH 214
T++ K++ AS E F + Q + + + KA+ L KE+ LH
Sbjct: 125 TLTAKLLVASFGETIPFSLPLGQLSINVPPSLYHKAEFSPLDELSPKEVILH 176
>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +2
Query: 290 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIV 469
++LEK+F G + + PK + K RSR L + A + + VF
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFF-AKVPEKVFAVVTH 166
Query: 470 GKRIRV 487
G IR+
Sbjct: 167 GVDIRL 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,781
Number of Sequences: 5004
Number of extensions: 37589
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -