Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323C11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 155 2e-38
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 136 1e-32
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 75 3e-14
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 1.7
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 1.7
04_04_1644 + 35015849-35016838 29 2.3
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 3.0
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 3.0
03_02_0488 - 8824980-8825267,8825364-8827775 29 3.0
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 5.2
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 27 9.1
05_05_0120 + 22520285-22520569 27 9.1
01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872 27 9.1
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 155 bits (376), Expect = 2e-38
Identities = 80/155 (51%), Positives = 113/155 (72%), Gaps = 2/155 (1%)
Frame = +2
Query: 59 TMSTKIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSII 232
T KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++
Sbjct: 3 TARKKIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVV 62
Query: 233 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRT 412
I+VP KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RT
Sbjct: 63 IHVPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRT 118
Query: 413 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKV 517
LT+V+D ILED+V+PAEIVGKRIR +LDG+++IK+
Sbjct: 119 LTAVHDGILEDVVYPAEIVGKRIRYRLDGAKVIKI 153
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 136 bits (329), Expect = 1e-32
Identities = 71/133 (53%), Positives = 98/133 (73%), Gaps = 2/133 (1%)
Frame = +2
Query: 125 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 298
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 299 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 478
EKKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Query: 479 IRVKLDGSQLIKV 517
+R LDG +++K+
Sbjct: 154 VRYHLDGRKIMKI 166
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 74.9 bits (176), Expect = 3e-14
Identities = 42/98 (42%), Positives = 63/98 (64%)
Frame = +2
Query: 179 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 358
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 359 PSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 472
P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 398 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 514
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 393 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 277
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_04_1644 + 35015849-35016838
Length = 329
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 175 PKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHR 59
P L FE+ + +FDQR+ E ++L DL HR
Sbjct: 134 PALAFEINLS-DFDQRVHRHAAESVQLLAEHGVDLAAHR 171
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 131 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 265
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 131 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 265
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 80 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 256
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 257 KAFQKI 274
+ +++
Sbjct: 359 DSSEEL 364
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +2
Query: 131 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 265
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 403 AWPLLFVSNTGFVAGLRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQF 251
AW L +S++ ++ L +S KD+M +L FE D+P + F
Sbjct: 1167 AWKSLAISSSAMLS-----LMLSIKDFMLPEKLCFEQYDEPSITFQSSANF 1212
>05_05_0120 + 22520285-22520569
Length = 94
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -1
Query: 461 QQGRPSPRG*HRTQRSMSLSVAS 393
QQ RPSP HR R+MS++VAS
Sbjct: 56 QQARPSPAARHR--RAMSVAVAS 76
>01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872
Length = 91
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 128 ALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY 238
A++E+E N DL + L T+ E H + S++IY
Sbjct: 2 AILEIEDNDDLLSLPGSLANTRIGESPSHQRDSLLIY 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,793,360
Number of Sequences: 37544
Number of extensions: 247747
Number of successful extensions: 714
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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