Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323C10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.32 
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    29   0.32 
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    29   0.56 
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    28   0.73 
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    26   3.9  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.9  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    25   9.0  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   9.0  

>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = -3

Query: 303 KIQKNKTPSKNTITRNIVEVIKITVTEKNVDISSKFNNQAAIKVIANGFLSNDSINTFDA 124
           K+     P   T+     E  K+    KN+D  S F  Q  I+VIA   L + +  + D 
Sbjct: 146 KVATEILPPVETLRSRQFEASKLREIRKNID--SGFYTQEEIEVIARSMLDDVAELSSDY 203

Query: 123 LRNFSEVLQYELCSE 79
           L N      +E CS+
Sbjct: 204 LGNTVVQKFFEYCSD 218


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +2

Query: 50  FLIVVKMS-FRSLHNSYCKTSEKFLNASKVLIESLLRK 160
           F +  K S F+SL  SY K + + ++ S++L++++LRK
Sbjct: 177 FQLACKYSNFKSLMTSYNKVNGEHVSQSRILLDNILRK 214


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -3

Query: 258 NIVEVIKITVTEKNVDISSKFNNQAAIKVIANGFLSNDSINTFDALRNFSEVLQYELCSE 79
           N V  I  TV  +      K + +A    +    L  D +N F  L + +++L   LC +
Sbjct: 95  NHVPSISKTVNIRETSKHLKHSTKAPKCSLPTSALEIDHLNNF--LHSSAKILDRALCDQ 152

Query: 78  RNDIFT--TIKK 49
            N +FT  T+KK
Sbjct: 153 SNQLFTDYTVKK 164


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -3

Query: 315 QHM*KIQKNKTPSKNTITRNIVE-VIKITVTEKNVDISSKFNNQAAIKVIANGFLSNDSI 139
           QHM K +K K        R I   V   T T++ + +S      AAI    +  +SN SI
Sbjct: 524 QHMHKTKKKKHEHFKASVRPITAAVFAPTKTKQLLTLSGDPVYLAAISARRSSVISNASI 583

Query: 138 NTFDALRNFSEV 103
            T  +LRN   +
Sbjct: 584 ETGPSLRNLKSL 595


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 291 NKTPSKNTITRNIVEVIKITVTEKNVD-ISSKFNNQAAIKVIANGFLSNDSINTFDALRN 115
           ++TPS+    RNI E I++T+ ++ ++ +   +     ++      +   +   FD L N
Sbjct: 21  SQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLEN 80

Query: 114 FSEVLQ 97
            S  L+
Sbjct: 81  ASRALK 86


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/77 (20%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
 Frame = -3

Query: 294 KNKTPSKNTITRNIVEVIKITVTEKNVD----ISSKFNNQAAIKVIANGFLSNDSINTFD 127
           K++TP +  I+   V+ +K+T   K ++    +S +   + A+K+    ++  D+   F 
Sbjct: 490 KSQTPEQTVISFIDVQCVKVTEATKTLELSVILSERLVYETALKLPVIKYVKGDNRFCFK 549

Query: 126 ALRNFSEV-LQYELCSE 79
            L  + ++ L+++L ++
Sbjct: 550 QLLEYYDIYLKFKLLAD 566


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 68  MSFRSLHNSYCKTSEKFLNA 127
           M F+ L++ YC  S+ F+N+
Sbjct: 473 MVFQKLYSKYCTESQHFINS 492


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 38  KDTAFLIVVKMSFRSLHNSYCKTSEKFLNASKVL 139
           + T  L  +   F  LH  YC T   F  ASK+L
Sbjct: 248 QSTDKLYTIWTPFSELHYFYCATPITFSIASKIL 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,846,248
Number of Sequences: 5004
Number of extensions: 34141
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)