Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323C10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0474 - 18173154-18173255,18173861-18173961,18174118-181741...    29   3.0  
12_01_0654 - 5542349-5542480,5542491-5542666,5542835-5542937,554...    27   6.9  
09_02_0156 + 5070962-5072351,5072466-5073139                           27   6.9  

>10_08_0474 -
           18173154-18173255,18173861-18173961,18174118-18174170,
           18174291-18174364,18174628-18174692,18174916-18174982,
           18175295-18175387,18176696-18176794,18176877-18176921,
           18177055-18177178,18177304-18177363,18178982-18179061,
           18179347-18179349
          Length = 321

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 225 EKNVDISSKFNNQAAIKVIANGFLSNDSINTFDALRNFSEVLQYE 91
           EK V+      +  A++V+++G L++D +   + LRN   + +YE
Sbjct: 261 EKRVEDLKMLYSAYAMEVLSDGHLNDDKLAALNQLRNIFGLAKYE 305


>12_01_0654 -
           5542349-5542480,5542491-5542666,5542835-5542937,
           5542971-5543084,5543104-5543163,5543258-5544316
          Length = 547

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 216 VDISSKFNNQAAI-KVIANGFLSNDSINTFDALR 118
           V +S+ FN +  I K+I +  LS  S +T+DAL+
Sbjct: 261 VSVSTNFNAETLISKIIQSVTLSKPSFDTYDALQ 294


>09_02_0156 + 5070962-5072351,5072466-5073139
          Length = 687

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 483 IGRIGYRAPPRVXXXXXXYKTDIFTILGSVPYKVS*TCCKNPIVDIIN 340
           +G IGY AP           TD+F+  G    +V  TC K PI + +N
Sbjct: 521 VGTIGYMAPELASSSKATPLTDVFS-FGIFVLEV--TCGKRPIKEDVN 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,818,708
Number of Sequences: 37544
Number of extensions: 174148
Number of successful extensions: 534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)