Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323C09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   5.2  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   6.8  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   9.0  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 230  ENCNEHTIYYWDLLPVINMTRVINHXGSGMPQXSTI 337
            +NC+ H  +  D+ P      V N   SGMP    +
Sbjct: 965  KNCSWHKTFISDVFPTKFQFNVYNFDESGMPDQKKV 1000


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +2

Query: 80  NFISNWNGDFPNY--PLTPAD-LKIPQAVMGALFQIFDRLGIDRDAVLAPPPEENC 238
           N   +W+   PN   P T  D L +PQ  +  +   FD +G     +  P  EE C
Sbjct: 185 NSALHWSHRIPNILNPSTLCDMLPVPQFAVRLMGLYFDNVGWSSHIIHRPSFEEAC 240


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
 Frame = +3

Query: 189 LESIATLYLR-----HPLKKTVTSTQYITGT 266
           LE I  L+L+     HPL K++TST    GT
Sbjct: 411 LEEIENLWLKVFDSSHPLGKSITSTLQAIGT 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,827
Number of Sequences: 5004
Number of extensions: 28220
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)